Streptomyces durmitorensis: M4V62_14030
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Entry
M4V62_14030 CDS
T08503
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdur
Streptomyces durmitorensis
Pathway
sdur03030
DNA replication
sdur03410
Base excision repair
sdur03420
Nucleotide excision repair
sdur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4V62_14030 (ligA)
03410 Base excision repair
M4V62_14030 (ligA)
03420 Nucleotide excision repair
M4V62_14030 (ligA)
03430 Mismatch repair
M4V62_14030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdur03032
]
M4V62_14030 (ligA)
03400 DNA repair and recombination proteins [BR:
sdur03400
]
M4V62_14030 (ligA)
Enzymes [BR:
sdur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M4V62_14030 (ligA)
DNA replication proteins [BR:
sdur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M4V62_14030 (ligA)
DNA repair and recombination proteins [BR:
sdur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M4V62_14030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M4V62_14030 (ligA)
MMR (mismatch excision repair)
DNA ligase
M4V62_14030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M4V62_14030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UQT56126
LinkDB
All DBs
Position
complement(3177528..3179711)
Genome browser
AA seq
727 aa
AA seq
DB search
MAVEQQGSVPAEARDQHAQLAEQIEEHRFRYYVNDQPVVSDAEFDKLLRSLQALEDEYSE
LRTPDSPTQKVSGAYETEFTSVQHRERMLSLDNAFDDEELAAWADRVAKEVGTGDYHFLC
ELKVDGLAVNLTYEDGKLTRAATRGDGRTGEDITPNVRTIADIPDRLKGDDIPALVEIRG
EVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREG
FDIDCLSHAYELLHGWGLPTAQHNKVVQGLDGVREFITYFGENRHSVAHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKKKGVFIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPAECPECGT
ALRPMKEGDIDLRCPNAQSCPAQLRERLFYLAGRKSLDIENFGYVAAAALTKPLEPSEPP
ILDEGDIFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEARKNAVSML
ENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAAVEGVGPTIA
ASLKQWFEEDWHREILRKWRAAGVRMEEEGGGEDEGPRPLEGLTVVVTGTLENHTRDGAK
DALQSRGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLEQGPDAAAE
VALPTEE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagcaaggctctgtgcccgccgaggcacgggatcagcacgcccagctg
gccgaacagatcgaggagcaccgcttccggtactacgtgaacgaccaaccggtcgtcagc
gacgccgagttcgacaagctccttcgttcgcttcaggccctggaggacgagtacagcgag
ctgcgcacgcccgactcgcccacccagaaggtctccggggcgtacgagaccgagttcacc
tcggtgcagcaccgcgagcggatgctctccctggacaacgccttcgacgacgaggagctc
gccgcctgggccgaccgcgtggccaaggaggtcggcaccggcgattaccacttcctgtgc
gaactgaaggtcgacggcctcgccgtgaacctcacgtacgaggacggcaagctcacacgc
gcggccacgcgcggcgacggccgcacgggtgaggacatcacaccgaacgtccgcaccatc
gcggacatcccggaccgcctcaagggcgacgacatccccgccctggtcgagatccgcggc
gaggtcttcttccccatggagaagttcgaggagctgaacgcccgcctggtggaggcgggc
gacaagcccttcgccaacccgcgcaacgcggcggcgggttcgctgcgccagaaggacccg
cgcgtcaccgcgacgcgcccgctgcacatggtggtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctcagccacgcctatgagctgctgcacggctggggcctgcccacc
gcccagcacaacaaggtggtccaagggctcgacggcgtgcgggagttcatcacgtacttc
ggcgagaaccgccactcggtggcgcacgagatcgacggcgtcgtcgtgaaactggacgag
atcccgctccagggccgcctcggctcgacctcgcgtgccccgcgctgggcgatcgcctgg
aagtacgcccccgaggaggtcaacaccaagctggtcaacatccgcgtgggcgtcggccgc
accggccgcgtcacgccgtacgcccaggtggagcccgtgaccgtcgcgggatccgaggtc
gagttcgccaccctgcacaaccaggacgtggtgaagaagaagggcgtcttcatcggggac
acggtcgtcctgcgcaaggcgggcgacgtcatcccggagatcctcggccccgtcgtcgac
ctgcgtgacggcaccgagcgggagttcgtgatgcccgccgagtgccccgagtgcgggacg
gcgctgcggccgatgaaggagggcgacatcgacctccggtgccccaacgcccagtcctgc
cccgcccagttgcgcgagcggctcttctacctcgcgggccgcaagagcctggacatcgag
aacttcgggtatgtggccgccgccgcgctcaccaagccccttgagccctccgagccgccg
attctcgacgagggcgacatcttcgacctgaccatcgagcgcctcctgcccatcaaggcg
tacgtactggatcaggacagcggtctgcccaagcgggaccccaagacgggcgaggagaag
atcgccacggtcttcgccaaccagcagggcgaggccaggaagaacgccgtttcgatgctg
gagaacatcgcggcggccaaggagcgcccgctcgcgcggatcatcacgggcctgtccatc
cgccatgtcggcccggtcgccgcggaggcgctcgcccgcgaattccggtcgatcgaccgc
atcgagcaggccacggaggaggagctcgccgccgtggagggcgtgggcccgaccatcgcc
gcctccctgaagcagtggttcgaggaggactggcaccgggagatcctgcgcaagtggcgc
gcggccggggtccgcatggaggaagagggcggaggcgaggacgaggggccgcgaccgctc
gaaggcctcaccgtcgtcgtgaccggaacgctggagaaccacacgcgggatggcgcaaaa
gatgcgttgcagagccggggagcaaaggtcaccggttccgtttcgaagaagacagcattc
gtagttgtgggcgacaatcccggctcgaagtacgacaaggcgatgcagctgaaggttccg
gttcttaacgaggaaggcttcgccgtcctgctggaacaggggccggacgcggcagcggaa
gtcgcgcttccgaccgaggagtag
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