Streptomyces davaonensis: BN159_2909
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Entry
BN159_2909 CDS
T02518
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdv
Streptomyces davaonensis
Pathway
sdv03030
DNA replication
sdv03410
Base excision repair
sdv03420
Nucleotide excision repair
sdv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN159_2909 (ligA)
03410 Base excision repair
BN159_2909 (ligA)
03420 Nucleotide excision repair
BN159_2909 (ligA)
03430 Mismatch repair
BN159_2909 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdv03032
]
BN159_2909 (ligA)
03400 DNA repair and recombination proteins [BR:
sdv03400
]
BN159_2909 (ligA)
Enzymes [BR:
sdv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN159_2909 (ligA)
DNA replication proteins [BR:
sdv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN159_2909 (ligA)
DNA repair and recombination proteins [BR:
sdv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN159_2909 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN159_2909 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN159_2909 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN159_2909 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
CCK27288
UniProt:
K4R1S9
LinkDB
All DBs
Position
complement(3313621..3315813)
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPAEAREKHAKLAEQIEEHRFRYYVKDAPVVSDAEFDKQLRALEALEEEY
PELRTPDSPTQKVAGAYETEFTAVQHRQRMLSLDNAFDDLELAAWAERVHKDVGASAYHF
LCELKVDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLSGDGVPDLVEI
RGEVYFPMEKFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAL
EGFEGLSRLSQAYDLLKTWGLPTSRHNKVVGDLDGVRAFIEYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPD
CGTPLRPMKEGDVDLRCPNARGCPAQLRERLFYLAGRKSLDIEHFGYVAAAALTKPLEPS
EPPLIDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVARVFANQQGEAKKNAL
AMLENIQAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIERIEQASEEELAATDGVGA
IIAASLKEWFAEEWHQEILRKWRAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLERFTRD
GAKEELQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFTVLLEQGPEA
AAEVALPTEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccgccgaggcgcgggaaaagcacgcc
aagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccggtc
gtcagcgacgcggagttcgacaagcaactgcgcgcgctggaggccctggaggaggagtac
ccggagctgcgcaccccggactcgccgacccagaaggtcgcgggcgcgtacgagacggag
ttcaccgcagtccagcaccgtcagcggatgctctccctggacaacgccttcgacgacctg
gagctcgccgcctgggccgagcgcgtccacaaggacgtcggcgcctccgcgtaccacttc
ctgtgcgagctgaaggtcgacggcctcgccgtgaacctgacgtacgagcggggacggctc
acccgcgcggcgacccgcggtgacggccgcacgggcgaggacatcacgccgaacgtgcgc
accatcgccgagatcccggaccggctcagcggcgacggcgtcccggacctggtggagatc
cgcggcgaggtctacttcccgatggagaagttcgaggagctcaacgcccgcctggtcgcg
gccggtgacaagcccttcgccaacccgcgcaacgccgccgccggttcgctgcgccagaag
gacccgcgggtcaccgccacccgccccctgcacatggtcgtccatggcatcggcgccctg
gagggcttcgagggcctctcccgcctctcccaggcgtacgacctgctcaagacctggggc
ctgcccacctcccggcacaacaaggtggtcggcgatctcgacggcgtccgcgcgttcatc
gagtactacggcgagaaccgccactccgtggagcacgagatcgacggcgtcgtcgtcaag
ctcgacgagatcccgctccagggccgcctcggctccacctcccgcgccccgcgctgggcc
atcgcgtacaagtacgcgccggaggaggtcaacaccaagctggtcaacatccgggtgggc
gtgggccgtacgggccgggtcacgccgtacgcccaggtcgagccggtgacggtggccggt
tccgaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggtgtgctg
atcggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggtccc
gtcgccgacctgcgcgacggcagcgagcgcgagttcgtgatgccggccgagtgccccgat
tgcggtacgccgctcaggccgatgaaggagggcgacgtcgacctgcgctgcccgaacgcg
cggggctgcccggcgcagttgcgggagcgcctgttctacctcgcgggccgcaagtcgctg
gacatcgagcacttcggttacgtcgccgcagctgccctcaccaagccgctggagccttcg
gagccgccgctgatcgacgagggcgacctgttcgacctcaccatcgagcggctgctgccc
atcaaggcgtacgtcctggaccaggacagcggtctgcccaagcgggacccgaagaccggc
gaggagaaggtcgcccgggtcttcgccaatcagcagggcgaggcgaagaagaacgcgctt
gccatgctggagaacatccaggcggccaaggaacgccccctcgcccgggtgctcacgggc
ctgtcgatccgtcatgtgggaccggtcgccgccgaggcgctggcccgcgaattccgctcg
atcgagcggatcgagcaagccagtgaggaggagctggccgccaccgacggcgtcggcgcg
atcatcgcggcctcgctgaaggagtggttcgccgaggagtggcaccaggagatcctccgc
aagtggcgggcggccggcgtgcgcatggaggaggagggctccggcgaggacgaggggccg
cgcccgctggaaggtctcaccgtggtcgtgaccggcactctggagcgcttcacccgggac
ggcgccaaggaggagctccagacccgcggggccaaggtgaccggttcggtctcgaagaag
acgtctttcgtcgtcgtgggtgacaatcctggttcgaagtacgacaaggcgatgcagctg
aaggtgccggttctgaacgaggacggcttcaccgtcctgctggaacagggccccgaggcg
gcggccgaagtcgctcttccgaccgaggagtag
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integrated database retrieval system
