Symmachiella dynata: Mal52_06270
Help
Entry
Mal52_06270 CDS
T06944
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdyn
Symmachiella dynata
Pathway
sdyn03030
DNA replication
sdyn03410
Base excision repair
sdyn03420
Nucleotide excision repair
sdyn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mal52_06270 (ligA)
03410 Base excision repair
Mal52_06270 (ligA)
03420 Nucleotide excision repair
Mal52_06270 (ligA)
03430 Mismatch repair
Mal52_06270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdyn03032
]
Mal52_06270 (ligA)
03400 DNA repair and recombination proteins [BR:
sdyn03400
]
Mal52_06270 (ligA)
Enzymes [BR:
sdyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mal52_06270 (ligA)
DNA replication proteins [BR:
sdyn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mal52_06270 (ligA)
DNA repair and recombination proteins [BR:
sdyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mal52_06270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mal52_06270 (ligA)
MMR (mismatch excision repair)
DNA ligase
Mal52_06270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mal52_06270 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
zf-RING_DCST1_C
Motif
Other DBs
NCBI-ProteinID:
QDU42172
UniProt:
A0A517ZI85
LinkDB
All DBs
Position
798769..800787
Genome browser
AA seq
672 aa
AA seq
DB search
MSAKVQKQIEKLRDELRRHSYLYYVEARPEIPDREFDKLLKQLEALEQQHPEFDTPDSPS
HKVGGEPIAGFKTVEHREPMLSIDNVYDVDAVRDFDTRLKKLLGSDDDLAYVAEYKIDGV
AISLIYENGLLVQGVTRGDGRQGDDITHNARILRGVPLRLRGDNPPPVLEVRGEVFISNP
DFAHIKAAQVQAGEQVFINPRNSAAGALKLLDPKIAIQRKLRFFAHGAGYVEGVEFPTQM
EFLTAIRNWGIPTTPGVTLCPSLDAALTQCETFIENLHSLDFEVDGIVLKVNDREVQEEL
GRTSKSPRWILAYKWEKYEAVTQIESIDIQVGKTGALTPVAHLKPVEIDLTTVSRASLHN
RDEVERLGVRIGDWVVVEKAGKIIPHVVRVEEERRDGTEEEFAFPKNCPVCDTPAVQDEG
GVYVRCPNPDCPAQLRETLRFFASRSAMDIEGLGIKLIEQLLAAKLLTSLTDVYRLPDRR
EELLALERMGEKSVDNLLAAIEGSKTQPLWRLLTGLNIRHVGTNTSQVLMRQFGTLDEIM
QQTEEQLAEVDEIGPVIAAAVSQFFHSDVGRGIVEELRGFGLNFGEPVEAQETAEGDLIF
DGKTIVVTGTLTKFTRDEIKELIRNHGGRAAGSVSKKTDYVVAGEKAGSKLDKATSLGVP
VLTEDEFLAMVQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaaagttcaaaagcaaattgaaaagctccgcgacgaattgcggcggcatagt
tacttgtattatgtcgaggcacgcccggaaattccggaccgtgaattcgacaaactgctc
aagcaactcgaagcgctcgaacaacaacaccccgaatttgacacgcccgacagcccctcg
cacaaggtgggtggcgaaccgattgccgggttcaagacggtcgagcaccgtgagccgatg
ttgtcgatcgacaatgtctatgatgtcgacgctgtacgcgatttcgacacgcggctcaaa
aaactgctcggcagcgacgacgacttggcctatgtggcggaatacaaaattgacggcgtg
gccatttcactgatttacgaaaacggtctgttggtgcaaggcgtgacccgcggcgatggg
cggcagggggatgacatcacgcacaatgcccgcattttacggggtgtgccgttgcgtttg
cggggagacaatcctcctcccgtgctcgaagtgcgcggcgaagtcttcatcagcaatccc
gactttgcgcatatcaaagcagcgcaggtccaagcgggtgagcaagtcttcatcaatccc
cgcaactccgccgccggcgcgctgaagttgctcgatcccaaaatcgccattcaacgcaag
ctgcggttttttgctcacggcgcggggtatgtggaaggtgtcgaattccccacgcagatg
gaattcctcaccgccatccgcaattggggtatccccaccactcccggcgtcacgctctgc
ccgtccctcgatgcggcgctgacccaatgtgaaacgttcatagagaacttgcactcgttg
gactttgaagttgacggcatcgtgctcaaggtcaatgaccgggaagtccaggaggagttg
gggcggaccagcaaaagcccgcgctggattttggcctacaagtgggagaaatacgaagcg
gtcacgcagattgaaagcatcgacatccaagtcggcaagaccggcgcgctgacacccgtg
gcccatctcaaaccggtggaaatcgatctcacgactgtctcgcgagccagtttgcacaat
cgcgacgaagtcgaacggttgggcgttcgtatcggcgactgggttgtggtggaaaaagcg
ggcaagatcattccacacgttgtgcgtgttgaagaagagcgtcgcgacgggaccgaagag
gaattcgcgtttcctaagaattgccctgtgtgcgatacaccggcggtgcaagacgaggga
ggcgtctacgtccgctgccccaatcccgactgccccgcgcaattgcgcgaaaccttgcgg
ttctttgcctcgcggtcggcgatggatattgaggggttgggcatcaaactgattgaacag
ttgctagcggccaagctgttgacgagcctgaccgatgtgtatcgcttgcccgatcgccgc
gaagaactgctcgcactggaacggatgggagaaaaatcggtcgacaacctgctcgccgcc
atcgaaggttccaagacacaaccgctctggcggctgctgaccggtttgaatattcgtcac
gtcggtacgaacacatcacaggtcttaatgcggcagttcggcacgttggatgaaatcatg
cagcaaaccgaggaacagttggccgaagtcgatgaaatcggcccggtcattgctgcggcg
gtgtctcagtttttccattccgacgtcggccgcggcattgttgaggagttacgcgggttc
ggattgaatttcggcgaaccggttgaggcgcaagaaacagcagagggtgatttgatcttc
gacgggaaaacgatcgtcgtgaccggcacgctgacaaaattcacccgcgatgagatcaag
gaattgatccgcaatcatggcggaagggcagctggcagcgtgtcgaagaagaccgactac
gtcgtcgccggcgaaaaagcgggcagcaaactcgacaaagcgaccagcctgggcgtcccc
gtgctgaccgaagacgaattcctggcgatggtgcaataa
DBGET
integrated database retrieval system
