KEGG   Salmonella enterica subsp. enterica serovar Choleraesuis: SCH_2872
Entry
SCH_2872          CDS       T00240                                 
Symbol
ygcI
Name
(GenBank) putative cytoplasmic protein
  KO
K19125  CRISPR system Cascade subunit CasD
Organism
sec  Salmonella enterica subsp. enterica serovar Choleraesuis
Brite
KEGG Orthology (KO) [BR:sec00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:sec02048]
    SCH_2872 (ygcI)
Prokaryotic defense system [BR:sec02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-E factors
    SCH_2872 (ygcI)
SSDB
Motif
Pfam: Cas_Cas5d
Other DBs
NCBI-ProteinID: AAX66778
UniProt: Q57KI4
LinkDB
Position
complement(3033744..3034490)
AA seq 248 aa
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRH
YQFLLRASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWM
IAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWY
QDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRK
EDACISQE
NT seq 747 nt   +upstreamnt  +downstreamnt
atgagccaatatctggtttttcagcttcatgggccgatggcctcctggggcgtggatgcg
ccaggcgaagtgcgccacagccatgaactaccctcgcgctcggcgctgttggggttatta
gctgcggcgctgggaattcgccgcgatgaggaggaacggctaaacgccttcaatcgtcat
taccaatttttgctgcgcgccagtggcaacccgcgctgggcgcgggattatcacacggtg
cagatgccgaaagaggtacgtaaggcacgttacttcagccgccgtgaagagttgcaggat
cctgaattactgagcgcgctgatttcccgacgcgactactacaccgacgcttggtggatg
atcgctgtcagcgcgacgccggacgcgccttacacgttggcgcagcttcaggcgtcgtta
caacatcctgtgttcccgctgtatctggggcgcaaaagtcaccctctggcgttgccgctt
gcgccgcaactgctggaagggagtgcggcggatgtcctgcgtgaagcatatcgttggtat
caggatcaattcaatgcgctgaaactgcctctccccagattacagaacgaatgctggtgg
gaaggtgaacacgatggcttaacggcgagcaaaattttacgtcgtcgcgacatgccgttg
agccgccagcaatggctgttcggtgaacgtagcgtgaatcaggggccgtggctccgcaag
gaggacgcgtgtatctctcaagaataa

DBGET integrated database retrieval system