Salmonella enterica subsp. enterica serovar Dublin: SeD_A2792
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Entry
SeD_A2792 CDS
T00757
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sed
Salmonella enterica subsp. enterica serovar Dublin
Pathway
sed03030
DNA replication
sed03410
Base excision repair
sed03420
Nucleotide excision repair
sed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SeD_A2792 (ligA)
03410 Base excision repair
SeD_A2792 (ligA)
03420 Nucleotide excision repair
SeD_A2792 (ligA)
03430 Mismatch repair
SeD_A2792 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sed03032
]
SeD_A2792 (ligA)
03400 DNA repair and recombination proteins [BR:
sed03400
]
SeD_A2792 (ligA)
Enzymes [BR:
sed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SeD_A2792 (ligA)
DNA replication proteins [BR:
sed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SeD_A2792 (ligA)
DNA repair and recombination proteins [BR:
sed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SeD_A2792 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SeD_A2792 (ligA)
MMR (mismatch excision repair)
DNA ligase
SeD_A2792 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SeD_A2792 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ACH75487
UniProt:
B5FQB9
LinkDB
All DBs
Position
complement(2665245..2667260)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLVLQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQT
ATIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgaatat
ctgtatcatgtgatggatgcgccagagattcccgatgccgaatatgaccgcctgatgcgg
gaactgcgagagctggaggcgcaacgtccggaccttatcacgccggattcgcccacgcag
cgcgttggcgcggcgccgctgacggcattcaaccagattcgccatgaagtaccgatgctg
tcgctcgataacgtatttgatgaagaaagcttcctggcgtttaacaagcgagtgcaggat
cgtctaaaaagcacggaaaatgtcatctggtgctgcgagctaaaactggatggcctggcg
gtcagcattctgtatgaaaacggcgtgctggtgagcgctgcgacgcgtggcgacggcacc
accggtgaagatatcacttcaaacgtgcgcacgattcgcgccattccgttaaagctgcac
ggcgataacattccggcgcgtcttgaagttcgcggagaggtatttttaccgcaggccggg
tttgaaaagatcaatgaagacgcgcgccgcactggcggcaaagtgtttgctaacccgcgt
aacgcggcggcgggctcgttgcgtcagctcgatccgcgtattacggcgaagcgaccgcta
acatttttctgctacggcgtcggtattctggaaggcggcgagttgccggatacgcatctg
ggacgtttgctgcaatttaaagcgtgggggttaccggtcagcgatcgcgtgacgctgtgc
gattctccccaggcggtactggatttttatcgcaacgtcgaaaaagatcgccccacgctc
ggttttgatatcgacggcgtggtgattaaggtcaactcgctggttttgcaggaacagctg
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaatttcctgctcaggagcag
atgacttttgtgcgcgatgttgagtttcaggtcgggcgcactggggcgattacgccggtg
gcgcgtctggaaccggttcaggtggctggtgtgctggtcagcaatgccacgttgcataat
gccgatgaaattgagcgacttggcttgcgtattggcgataaggtggttatccgtcgggca
ggcgatgtgatccctcaggtggtcaacgtggttctgtccgaacgccctgaagagacgcgt
ccgattgtgtttccaacgcactgtccggtgtgcggatcggacgtagagcgcgttgaaggc
gaagccgttacccgttgtaccggcgggctgatttgcggcgcgcagcgtaaagagtcgctg
aaacattttgtgtcgcgccgggcgatggatgtagacgggatgggcgataagatcatcgac
caactggtggaaagggagtatgtccatacgccagcggatctgttccgtctgacggcgggt
aaactgaccggcctggaccgaatggggccaaagtccgcgcaaaatgttgtaaacgcgctg
gaaaaagccaaagcgacgacttttgcgcgttttctctatgcgctgggcatccgtgaagtg
ggtgaagcgacggcggcggggctggcggcttatttcggcacgctggaggcgctgcagacc
gctaccattgacgagttgcagaaagtacccgacgtggggattgtggtcgctacgcacgtc
tttaacttttttgccgaagagagcaatcgtgacgtgattgggcagctactggcggaaggg
gttcactggcccgcgccggtagtcattaatgtgcaagagatcgatagcccgtttgccggt
aaaaccgtggtactaaccggtagcctgagccagatgtcccgcgatgacgctaaagcgcgt
ttagcggcgctgggcgcgaaagtggcaggcagcgtatcgaagaaaaccgatctggtgatt
gccggtgaagcggcgggctccaaactggccaaagcgcaggaactgggtattaccgtgatt
gatgaagcggaaatgatccgcttactgggtgcctga
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integrated database retrieval system
