Sediminibacillus dalangtanensis: ERJ70_02200
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Entry
ERJ70_02200 CDS
T07146
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sedd
Sediminibacillus dalangtanensis
Pathway
sedd03030
DNA replication
sedd03410
Base excision repair
sedd03420
Nucleotide excision repair
sedd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERJ70_02200 (ligA)
03410 Base excision repair
ERJ70_02200 (ligA)
03420 Nucleotide excision repair
ERJ70_02200 (ligA)
03430 Mismatch repair
ERJ70_02200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedd03032
]
ERJ70_02200 (ligA)
03400 DNA repair and recombination proteins [BR:
sedd03400
]
ERJ70_02200 (ligA)
Enzymes [BR:
sedd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ERJ70_02200 (ligA)
DNA replication proteins [BR:
sedd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ERJ70_02200 (ligA)
DNA repair and recombination proteins [BR:
sedd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ERJ70_02200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERJ70_02200 (ligA)
MMR (mismatch excision repair)
DNA ligase
ERJ70_02200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ERJ70_02200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Zn_ribbon_NUD
HHH
RNA_pol_A_CTD
DUF1877
DUF4796_N
zf-IS66
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
QTM98228
UniProt:
A0ABX7VP53
LinkDB
All DBs
Position
424340..426343
Genome browser
AA seq
667 aa
AA seq
DB search
MNLEQAKAKIEELRDTLNQYGYEYYVLDKPSVPDAEYDKRLHELLELEGKFPELVTPDSP
SQRVGGEPIDEFKKVQHTVPMLSLANAFNEEDLRAFDRRAREGVGEAVTYVCELKIDGLA
VSLKYEDGKFVQGATRGNGTVGEDITTNLRTIGSIPLKISQKEPIEVRGEAYMPQKSFLA
LNEAKEQNGEEPFANPRNAAAGSLRQLDPRIAAKRNLSVFLYGVGQWEAGTLSSHSERLE
YMQKLGLKTNPEWRKCENIEEVIEFVNEWVEKRGSLDYDIDGIVIKVDRLDHQEQLGFTA
KSPRWAIAYKFPAEEAVTRLYDIELSVGRTGVVTPTALLDPVKVAGTTVQRASLHNEDLI
REKDIRVGDTVVIKKAGDIIPEVVRVVEEQRTGEEKEFYMPDQCPACGSELVRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVIEQLFDENLVHHISDIYKLERDELLKL
ERMGEKSVDNLLKAIEVSKENSLEHLLFGLGIRFVGAKAARTLAEEFEQMDRLQAAEYED
LTAVYEIGDKMADSVVRYFQKPQVKELIEELKQLGLNMEYKGVKKSEKTEDSIFAGKTIV
LTGKMETYSRPEAKEKIEMLGGKVTGSVSKKTDLLIAGEDAGSKYDKAKELDIEIWDEEQ
LKRALEE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagaacaagccaaagcaaaaatcgaggaactacgagacacactaaaccaatac
ggttacgaatattatgtgttggacaaaccgagtgtgccggatgccgagtacgataaacgg
ctacacgaactgcttgagctggaaggcaagtttcccgaattggttacacccgattcgcct
tcccagcgtgtcggtggagaaccgattgatgagttcaaaaaagtccagcacactgtaccg
atgctcagcctggccaatgccttcaacgaagaggatctccgtgccttcgaccgcagggct
cgtgaaggggtaggcgaagctgtcacctacgtttgtgaattgaaaatcgacgggctggct
gtatcgttgaaatatgaagatggcaagtttgttcagggggcgacccgtggcaacggaacc
gttggagaggacatcaccaccaatcttcgcacaattggcagcattccgttgaaaataagc
cagaaggaaccaatcgaagtccgcggagaagcatacatgccacaaaagtcttttctcgct
ttaaatgaagcgaaggaacagaatggggaagagccgttcgccaaccctcgcaatgcagca
gcaggctcattgagacagcttgatccgaggattgcagccaaacgtaatctcagtgttttt
ttatacggtgtcggtcagtgggaagccggtacattgtcttcccatagtgaacgactagag
tacatgcagaagctcggtttgaaaaccaaccctgaatggcgcaagtgtgaaaatatcgag
gaagtaatcgaatttgtcaacgaatgggtcgagaagcggggcagccttgactatgatatt
gacggaatcgtgatcaaggtggaccgtctggatcatcaagagcagctcggtttcactgcc
aaaagcccacgttgggcgatcgcttataagtttcctgccgaggaagcggtcaccaggctc
tacgatattgaactaagtgtcggccgaaccggcgtagtgacgccgaccgcccttttggat
cctgtcaaggttgccgggaccacggttcaacgagcttccttgcacaatgaagatttgatc
cgggaaaaggatattcgagtgggcgacaccgtcgtgataaaaaaagccggtgacatcatc
cctgaggttgtccgggtagtagaagaacaacggacaggcgaagaaaaggaattctatatg
cctgaccaatgtcctgcctgtggaagcgagctggtccgtcttgaggaagaggtagcattg
cgctgtatcaaccctaactgtcccgcacagttgaaagaaggactgatccacttcgtttcc
cgaaatgccatgaatattgacggtttgggggaaaaggtgatcgagcagttattcgatgaa
aacctcgtgcaccatatttccgatatttacaagctggaacgcgatgagctgttaaagttg
gagcgaatgggcgaaaaatccgttgacaacttgttaaaggccatcgaagtatcgaaggaa
aactctttagaacaccttttgttcggtctcggtatacgttttgtcggagccaaggctgca
agaacattggcagaagaatttgaacaaatggacagactgcaggccgctgagtatgaagat
ttgactgcagtttatgaaatcggcgataagatggctgattccgttgtccgttatttccaa
aaaccgcaagtgaaggaattaatagaagaactcaagcaactcggattgaacatggaatat
aaaggcgtgaaaaaatcggagaaaaccgaggattctatttttgccggcaaaacaattgta
ttgaccgggaagatggaaacctactccaggccggaagcaaaagaaaaaatcgagatgctt
ggtggcaaggtgaccggaagcgtcagcaagaaaacagatctactgattgccggagaagac
gcgggatcgaagtatgataaagcaaaagagctggacatagaaatatgggacgaagaacaa
ttgaagagagccttggaagagtag
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