Parasedimentitalea marina: EBB79_10920
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Entry
EBB79_10920 CDS
T05780
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sedi
Parasedimentitalea marina
Pathway
sedi03030
DNA replication
sedi03410
Base excision repair
sedi03420
Nucleotide excision repair
sedi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EBB79_10920 (ligA)
03410 Base excision repair
EBB79_10920 (ligA)
03420 Nucleotide excision repair
EBB79_10920 (ligA)
03430 Mismatch repair
EBB79_10920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedi03032
]
EBB79_10920 (ligA)
03400 DNA repair and recombination proteins [BR:
sedi03400
]
EBB79_10920 (ligA)
Enzymes [BR:
sedi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EBB79_10920 (ligA)
DNA replication proteins [BR:
sedi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EBB79_10920 (ligA)
DNA repair and recombination proteins [BR:
sedi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EBB79_10920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EBB79_10920 (ligA)
MMR (mismatch excision repair)
DNA ligase
EBB79_10920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EBB79_10920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AZV78337
UniProt:
A0A3T0N2W8
LinkDB
All DBs
Position
complement(2223031..2225256)
Genome browser
AA seq
741 aa
AA seq
DB search
MSEDEAREEFHELQVLLWAANREYHRGDSPSISDSVYDEAKHRFLELVEVYPNFDGAAKL
LTEVGAPVASGFGKISHSQRMLSLGNAFDDEDVVGFDSSIRKYLGIAADTSLSYTAEPKI
DGLSLSLRYEYGNLQQAATRGDGSTGENVTANALTIADIPQKISGAPEVLEVRGEVYMSH
EDFTELNVRQQERGGKLFANPRNAAAGSLRQLDAEITRSRPLRFFAYSWGELSEPLAGLQ
LEAIESLKILGFQTNPLTQLCATPSELVAHYRKIEAQRATLGYDIDGVVYKVNDLGLQAR
LGFRSTTPRWAIAHKFPAELAWTRIEAIDIQVGRTGALSPVARLAPVTVGGVVVSNATLH
NEDYIVGRDSKGAAIRNGKDIRIGDWVQVYRAGDVIPKISDVDLDKRPENSISFAFPSIC
PECGSQAVREEGDAVRYCTGGVICPAQAKEKMKHFVARKAFDIEGLGAKQIESFYADERL
SLREPADIFTLKKRDDGNFTKLKNRDGWGEQSADNLFNAIEDKRRIGFGRMLFSLGIRHV
GEAAAKDLALHFMSWGNFLLGVDAARAAALAWRKADEAVDAERIAAKAENRRAKIKETRD
AVIADSGIQAPNTAAWEDLIGIDGIGASVALSLTDTFANVEERAAIMRLADELQIMPPEA
PSSESPVAGKTVVFTGTLEKLTRAEAKAQAEELGAKVSGSVSKKTDILVAGPGAGTKAKK
AADLGVKVLDEDGWLAMIAQT
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagacgaagctcgtgaagaatttcatgagcttcaagtgttactctgggcagcg
aacagagagtatcaccgaggcgattctccttcgatttccgactcagtttacgacgaagca
aaacaccggttcctggagctggttgaggtatatcctaacttcgatggggctgcaaaactg
ctaaccgaagtaggtgcacccgtcgcatcgggttttggtaaaatcagccattcacagcgg
atgttatcgttaggaaatgcctttgatgacgaagatgttgtcggctttgatagcagcatc
cgcaaatatctcggaatagccgccgacacttcgcttagctataccgctgagcctaaaata
gacgggttgtcgctgtcattacggtatgaatatggcaatttacagcaggcggccacacgt
ggtgacggttctacaggtgaaaatgtcactgcaaatgctttgaccatcgcggacattcca
cagaaaatttccggtgcaccagaggttctggaagtgcgcggcgaagtttatatgagccat
gaagacttcactgaactgaatgtccggcaacaggagcgtggtggaaaactctttgccaat
ccacgtaatgctgcagcaggatcactgcgccaactggacgctgaaattactcggtccagg
cctttgcggttttttgcgtatagttggggtgagctttccgaaccactcgcaggtcttcag
ttggaggcaattgagagcctgaaaattttaggatttcaaacaaacccccttacacaactt
tgtgccacaccatcagagttagtagcgcattatcgcaaaatcgaggctcagcgtgcaaca
ctgggttacgatatcgacggggttgtctataaagtgaatgaccttggattgcaggcacgg
cttggatttcgctcaaccaccccacgatgggcgatagcgcacaaattcccggccgaattg
gcctggacccgaattgaggccatcgacattcaagttggccgaaccggtgccttgagccca
gttgcccggctggccccggtcacggttggcggcgttgtggtgtcaaacgccacattgcac
aatgaagattacatcgttggtagagattcaaagggtgccgccattcgcaatggcaaagac
atccggattggcgactgggtacaggtatatcgcgccggtgacgtgatcccgaaaatttca
gatgtggatttggataaaagacctgaaaattcaatttcctttgcctttccatccatttgt
cctgagtgcggcagtcaggcagtgcgggaagagggggatgccgtacgttattgcaccggg
ggggtgatctgtccggcgcaagccaaggaaaaaatgaaacattttgtcgctcgtaaggct
tttgacattgaagggttaggggccaaacagattgaatctttctatgcggatgagcgttta
tcccttcgcgaacccgccgacattttcactctgaagaaacgggacgacggcaattttacc
aaattaaaaaaccgagatggttggggggagcaaagcgctgacaatctgtttaatgcaatt
gaggataagcgtcgtatcggctttggccggatgctgttttctttgggcattcgtcacgtt
ggcgaggccgcggccaaagacttggctttgcatttcatgagctgggggaattttttgctg
ggagtggacgccgcccgtgcggcagcactggcatggcgtaaagctgatgaggccgtagat
gcagagcgtatcgctgcgaaggcggaaaatcggcgcgcaaaaatcaaggaaacgcgagac
gcggtgattgcggacagtggaattcaggcgccaaacactgcggcgtgggaagatcttatt
ggtattgatgggattggcgcttctgtcgctctttcacttacagatacttttgccaacgtc
gaagaacgtgctgcaatcatgaggttggcggacgagttgcaaattatgccacccgaagct
ccctctagtgaaagccctgtcgctgggaaaactgttgtgtttactggcacattggaaaaa
ttgactcgtgctgaagcaaaggcacaggccgaggaacttggagctaaggtgtctgggtcg
gtgtccaaaaagaccgatatcctggtggctggtccgggtgcgggaaccaaagcaaaaaaa
gccgctgaccttggagtaaaagttctcgatgaggatggctggcttgccatgattgctcag
acatga
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