Sedimentibacter sp. MB35-C1: RBQ61_05195
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Entry
RBQ61_05195 CDS
T10438
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03030
DNA replication
sedm03410
Base excision repair
sedm03420
Nucleotide excision repair
sedm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBQ61_05195 (ligA)
03410 Base excision repair
RBQ61_05195 (ligA)
03420 Nucleotide excision repair
RBQ61_05195 (ligA)
03430 Mismatch repair
RBQ61_05195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedm03032
]
RBQ61_05195 (ligA)
03400 DNA repair and recombination proteins [BR:
sedm03400
]
RBQ61_05195 (ligA)
Enzymes [BR:
sedm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBQ61_05195 (ligA)
DNA replication proteins [BR:
sedm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBQ61_05195 (ligA)
DNA repair and recombination proteins [BR:
sedm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBQ61_05195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBQ61_05195 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBQ61_05195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBQ61_05195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
BRCT_2
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
Lar_restr_allev
HHH
Nlig-Ia
zf_Rg
DUF4796_N
Peptidase_C14
Motif
Other DBs
NCBI-ProteinID:
WMJ78331
LinkDB
All DBs
Position
1133864..1135837
Genome browser
AA seq
657 aa
AA seq
DB search
MDDKLLLMKEKISLLNKANKAYYQENTEIMSNYEYDKLYDELLKLEKETGIVLSNSPSIN
VGYELLTSLPKEPHEKPMLSLDKTKNAAALKEWLGANEGLLSWKLDGLTIVMTYVGGNLV
KAVTRGNGEVGEVITNNARVFINIPLNISYKGTLVLRGEAVISYSDFTKINSEIHEAEAK
YKNPRNLCSGSVRQLNNRITAERNVQFYGFSLVKAEGKNFDNSREEQLRWLSSLGFSVVE
HKKVDSTNILDEIKWFEEHISENDLPSDGLVLTYNNIEYGESLGSTAKFPRDSIAFKWSD
EIKETVLMEIEWSASRTGLINPIAVFEPVELEGTTVSRASVHNLSIMENLELGVGDTIRV
YKANMIIPQISDNLTRSGNAKIPHSCPVCGGETKIKDENEIKTLYCMNENCLAKQIKSFT
HFVSRDAINIEGLSEATIEKLIAKGMIKELADIFHIGNFKTTIVQMEGFGEKSFENLVKS
VNNARKTTAARLLYSLGIANIGLSNARLICKKFNDDWYRIENAELEELTEIPGVGEVMAA
NYIKFFNDENKRQIVKDILKEVELERSEKNTSEQIFENINFVITGSVEKFKNRDELKALI
EKHGGKVTGSVTTKTNYLINNDNTSNSSKNKKAKELEIPIITEDEFIERFNVDIESK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggatgataagcttctgttgatgaaggaaaaaataagtttgttaaacaaagccaataag
gcatattatcaggagaatacagaaataatgtccaactatgaatatgacaagctctatgat
gagcttttgaagttggaaaaagaaaccggcatagtactatccaacagcccatcaattaat
gtgggttatgagctgcttacaagtcttccaaaagagccgcacgagaaacctatgctttca
ttggataaaacaaaaaatgccgctgcattgaaggaatggcttggtgcaaatgaaggattg
ttgtcatggaagcttgacggattgactatagttatgacatatgttggaggaaaccttgtt
aaagctgttaccagaggcaatggagaggttggagaggtaataactaataatgccagggta
ttcatcaatatacctctgaatattagctacaaggggacattggttttgagaggagaagct
gtaataagctattctgattttacaaaaattaatagcgagatacatgaggcggaagcaaaa
tataaaaaccccagaaatttatgcagcggttctgtaaggcagctgaacaacagaataacg
gcagaaagaaatgtacaattttatggattctctcttgtgaaagcagaaggaaagaacttt
gataattcaagagaagaacagttacgctggcttagcagtttggggttttctgttgtagaa
cacaaaaaggtggattcaacaaatatattagatgagattaagtggtttgaagaacacata
agtgaaaatgatctgccttccgatggactggttctgacatataataatattgaatacggc
gaatcgcttgggtctacagctaaatttcccagagactccatagcttttaaatggagtgac
gaaattaaagaaaccgtactgatggaaattgaatggagcgcttcaagaacgggattgatt
aatccaattgctgtatttgagccggtggagcttgaaggaacaaccgtcagccgtgcaagc
gtgcataatttaagcattatggaaaatcttgaactgggtgtgggcgacaccataagggtg
tacaaggcaaatatgataattcctcaaatatctgataaccttacaagaagtggaaatgca
aaaattccgcacagctgccctgtatgcggaggagagacaaagattaaggatgaaaatgaa
ataaaaactctttattgcatgaacgaaaattgtcttgcaaagcagataaagtcattcact
cattttgtgagcagagatgcaataaatattgaaggattgtcggaggctacaatagagaag
ctgattgcaaaaggtatgataaaagaattggcggatatatttcatataggtaattttaag
actacaatagttcaaatggaaggctttggcgaaaagtcttttgaaaatttagttaagtct
gtaaataatgcaaggaaaaccacagcggcaagacttttgtacagccttgggatagctaat
atagggctttcaaatgccagactcatatgcaagaaatttaatgatgactggtatagaatt
gaaaatgcggagttagaagagttgactgaaattccaggtgtaggagaggttatggctgcc
aattatattaagttttttaatgacgaaaacaagaggcagattgtaaaagacatccttaag
gaagttgaattggaaaggtcagaaaaaaatacatccgaacagatatttgaaaatataaac
tttgttataacaggatcagttgaaaaatttaaaaacagggatgagttgaaagccttaatt
gaaaaacatggaggcaaggtcacaggttcagttactacaaaaacaaattaccttataaat
aatgataatacatcaaattcttctaaaaataaaaaggctaaggaattggaaatacctata
attactgaagatgagttcattgaaaggttcaatgtcgatattgaatctaagtag
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