Sedimenticola thiotaurini: AAY24_03400
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Entry
AAY24_03400 CDS
T03943
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seds
Sedimenticola thiotaurini
Pathway
seds03030
DNA replication
seds03410
Base excision repair
seds03420
Nucleotide excision repair
seds03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAY24_03400 (ligA)
03410 Base excision repair
AAY24_03400 (ligA)
03420 Nucleotide excision repair
AAY24_03400 (ligA)
03430 Mismatch repair
AAY24_03400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seds03032
]
AAY24_03400 (ligA)
03400 DNA repair and recombination proteins [BR:
seds03400
]
AAY24_03400 (ligA)
Enzymes [BR:
seds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAY24_03400 (ligA)
DNA replication proteins [BR:
seds03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAY24_03400 (ligA)
DNA repair and recombination proteins [BR:
seds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAY24_03400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAY24_03400 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAY24_03400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAY24_03400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
5_3_exonuc
RNA_pol_A_CTD
BRCT_2
Zn_Ribbon_TF
RUBY_RBDX
Asd-4
Motif
Other DBs
NCBI-ProteinID:
AKH19558
UniProt:
A0A0F7JY10
LinkDB
All DBs
Position
773956..775971
Genome browser
AA seq
671 aa
AA seq
DB search
MTIPAEIQRRVEQLREQLNQHNYRYYVLDDPEVPDSAYDRLMRELQALEQQYPQLIDPAS
PTQRVGAQPLEGFGEVQHRIPMLSLDNAFSEEDMIDFDRRVRERLGGVEKVVYTAEPKLD
GLAISLRYESGLLVQASTRGDGSRGEDVTLNVRTIPSVPLRLLGSDWPEVLEVRGEIYMP
LAGFAKLNEQARIRGEKGFANPRNAAAGSLRQLDPKITAQRPLAMYCYGFGEITGGPLAT
TQSESIRRLADWGLRVSPEMRTVEGATGCLDYYREISERRPTLDYEIDGVVFKVDNLEQQ
AQLGFVSRAPRWAIAQKFPAQEEMTRLLAIDIQVGRTGALTPVARLEPVNVAGVTVTNAT
LHNEEEIRRKDIRVGDRVVVRRAGDVIPQVVRSIPEQRRSDLPVFRMPEQCPVCGSDVIR
DADEAVVRCSGGLFCPAQRRQAIRHFAARRAMDIEGLGDKLIDQLVSRGMVETPADLFHL
RLEELEQMERMGRKSATNLLEALEKSKQTSLGRFLFALGIREVGETTAQSLANHFGDLEP
IMQADTEALLQVPDVGPVVAQHLITFFRQEHNREVIQALIDAGVSWEPIVVPDAESLPLA
GKVFVITGTLSQPRDQIKAQLIARGAKVTGSVSKKTDYLVAGAEAGSKLAKAESLGVAIL
DEAGLARLLEL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacaatacctgccgagatccagcgtcgcgtagagcagctgcgcgagcagctcaaccag
cataactaccgctattacgttctggacgatcccgaggttccggatagtgcctatgaccgg
ctgatgcgtgagcttcaggcgctggagcagcaatatccgcaactgatcgatcccgcttcc
cctacacagcgggtcggtgcccagcccctggaggggttcggcgaggtacagcaccggatt
ccgatgttatcgctggataacgccttttccgaagaggatatgatcgattttgatcgacgg
gtccgggagcgccttgggggtgtggaaaaggttgtctataccgcagaaccgaaacttgac
ggtctggcgatcagcctgcgctatgaatccggcctgctggtacaggcatccacccgagga
gacggcagccggggcgaggatgtgaccctcaacgtccgaaccatcccctctgtaccgctg
cgattgctgggcagtgactggccggaagttttggaggtgcggggggagatctatatgccc
ctggccggttttgccaagctcaatgagcaggccaggatccgcggggagaagggtttcgcc
aatccacgcaatgcggcggccggcagtctgcggcaactcgatccgaaaatcactgcgcaa
cgtccgttggccatgtactgctacggttttggcgagatcacgggcggcccgctggcaact
acccagagtgaaagcatccggcgtttagccgattggggcttgcgggtctcaccggagatg
cgcacggtggaaggagcgaccggctgtctggattattatcgggaaatcagtgaacgacgc
cccaccctggattatgagatcgacggggtggtgtttaaggtggataacctggagcaacag
gcgcaactgggctttgtctcccgggctccccgttgggccattgcgcagaaattccccgcc
caggaggagatgacccgcctgttggcgatcgatatccaggtgggcaggaccggggcactg
accccggtcgcccggctggagccggtcaacgtggccggtgtaacggtaaccaatgccacg
ctgcataatgaagaggagatccggcgcaaggatatccgggtcggtgaccgggtggttgtt
cgccgggcaggggacgtgattccccaggtggtacgttccattcctgaacaacggcgcagc
gatctaccagtgttcaggatgcctgagcagtgtccggtctgtggttctgacgtaattcgt
gatgcggatgaagcggtggtccgttgcagtggcgggctgttctgtcccgcccagcggcgc
caggcgatccggcattttgctgcccgccgggccatggatatcgaggggctgggagacaaa
ctgatcgatcagttggtgagccgcggtatggtggagacaccggcagacctgttccatctt
cggttggaagaactggagcagatggaacggatgggtcgcaaatccgccaccaatctgctg
gaggccctggagaagagcaagcaaaccagtctggggcgttttctgttcgccttgggtatc
cgggaggtgggggagaccaccgcccaatccctggccaatcactttggtgacttggagccg
atcatgcaggcggatacggaagcgctattgcaagtgccggatgtgggtccagtggtggcc
cagcacctgatcaccttctttcgccaggaacacaatcgcgaggtgattcaggcgctgatt
gatgcgggggtgagctgggagccgattgtcgtgcctgatgccgagagtctgccactggcc
ggcaaggtgtttgtgattaccggaaccctcagccaacccagggatcagataaaggcacag
ttgatcgcacggggcgccaaggtaaccggcagcgtctcgaaaaagaccgattatctggtg
gcgggtgccgaggccggctccaaactggccaaggcagaatcactgggtgtggctattctg
gatgaagcggggctggcccggctgttggagctgtag
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integrated database retrieval system
