Sediminibacterium planctonicum: TEGAF0_21020
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Entry
TEGAF0_21020 CDS
T08564
Name
(GenBank) hemolysin D
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
sedt
Sediminibacterium planctonicum
Pathway
sedt01501
beta-Lactam resistance
sedt01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
TEGAF0_21020
01503 Cationic antimicrobial peptide (CAMP) resistance
TEGAF0_21020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sedt03036
]
TEGAF0_21020
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sedt02000
]
TEGAF0_21020
01504 Antimicrobial resistance genes [BR:
sedt01504
]
TEGAF0_21020
Chromosome and associated proteins [BR:
sedt03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
TEGAF0_21020
Transporters [BR:
sedt02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
TEGAF0_21020
Antimicrobial resistance genes [BR:
sedt01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
TEGAF0_21020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-barrel_RND
BSH_CusB
RND-MFP_C
BSH_RND
HH_MFP_RND
Biotin_lipoyl
BSH_CzcB
YknX_C
BSH_YknX
CzcB_C
HH_EMRA
HH_AAEA_pHBA
Beta-barrel_RND_2
KTSC
BSH_LcnD
Motif
Other DBs
NCBI-ProteinID:
BDQ12885
LinkDB
All DBs
Position
complement(2373295..2374449)
Genome browser
AA seq
384 aa
AA seq
DB search
MKINFSALFKGFSPLCLLTIVVLVGCETKEKAGTAELIPSFPVVEVVQKDTVLQTDYVAD
IQAVKNVEVRARVQGFLEKIFVDEGQEVKKGQPMFQINDLEYKTELAKAKAAVSNAMAEA
KAAELELGRTKILVEKNVISKTEYELAASKVAASKAKIEEALSSQTSAETKLSYTFIKAP
FDGIIDRIPLKMGSLIDPGALLTTISDIHNVYAYFNISENEYLRFKNNTSKSVHENKPVN
LVLADGTPYPFTGKIETSDGEFNENTGAIAFRARFPNPSKLLKHGASGKARLTTEVDNAI
IIPQKATFEIQDKTFVFVVNKDNTIQMRAFKPGRRVAQYYIVEAGLKPGENIVYEGVQSI
RQGAKIKPVKMNLDSLMQTALTIN
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaatttttcagccctttttaaaggtttttcgcctttatgtctcttaaccata
gttgtattggtaggatgtgaaaccaaggaaaaagcaggtacggcagagcttatacccagc
tttccagttgtagaagtagttcaaaaagataccgtattacaaaccgactatgttgcagat
attcaggctgtaaaaaatgtggaagtgagagcaagggtgcaaggtttccttgaaaaaata
tttgtagatgagggtcaggaggtaaaaaaaggacaacccatgttccaaataaatgacctt
gaatataaaaccgaattagccaaagctaaagctgcggtttccaatgcaatggccgaagca
aaagcagccgaactagaattaggcagaacaaaaattctggtggagaaaaatgtgatctca
aaaacagaatatgaattagctgcttcaaaagtagcagcttctaaagcaaagattgaggaa
gcactttcttcacaaaccagtgcagaaaccaagctctcttatacatttatcaaagctccc
tttgatggtatcatcgatagaattcctttgaaaatgggtagcttaattgatccaggtgca
ttactaacgactatttcagacattcacaatgtttacgcctattttaatatttcagaaaat
gaatacttgagattcaaaaacaatacttcaaaaagtgttcatgaaaacaaaccagtaaat
ctagtattagcggatggaacaccttatcccttcacaggtaaaatagaaacaagtgacggt
gaattcaatgaaaatacaggtgccattgccttccgtgcaagatttcctaatccaagtaaa
ctattaaaacatggtgcttcggggaaggcaagattaacaacagaggttgataatgccatt
attattccacaaaaagcaacgtttgaaattcaagacaaaacctttgtatttgttgtaaat
aaagacaatacaattcaaatgcgggcttttaaacctggaagaagagttgcccaatattat
attgttgaagcaggattgaaacctggagagaatattgtttacgaaggcgttcaaagcatt
agacagggtgcaaaaataaaacctgtaaaaatgaatttagacagcttaatgcaaacggct
ttaactatcaactaa
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