Sediminibacterium sp. TEGAF015: TEGAF0_22300
Help
Entry
TEGAF0_22300 CDS
T08564
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03030
DNA replication
sedt03410
Base excision repair
sedt03420
Nucleotide excision repair
sedt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TEGAF0_22300 (ligA)
03410 Base excision repair
TEGAF0_22300 (ligA)
03420 Nucleotide excision repair
TEGAF0_22300 (ligA)
03430 Mismatch repair
TEGAF0_22300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedt03032
]
TEGAF0_22300 (ligA)
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_22300 (ligA)
Enzymes [BR:
sedt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TEGAF0_22300 (ligA)
DNA replication proteins [BR:
sedt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TEGAF0_22300 (ligA)
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TEGAF0_22300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TEGAF0_22300 (ligA)
MMR (mismatch excision repair)
DNA ligase
TEGAF0_22300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TEGAF0_22300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
RNA_ligase
MobC_2
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
BDQ13013
LinkDB
All DBs
Position
complement(2516691..2518787)
Genome browser
AA seq
698 aa
AA seq
DB search
MYTAEQTKVLQDQSKDILSKLNNSVTFNDLALLKQVLRFHEYRYYVLNDPLLSDYEYDLL
YQCLVKLEAANPDMISPDSPTQRVGSSLNQFFETTPHLVPMLSLDNSYNAEDLQDFDRKA
RELSGTDLLEYCIEPKFDGASISLYYENDLLVRAVTRGDGVAGEDITNNIKQIKSIPLYA
PFSTRGIQQIEIRGEVIMSKNAFEQYNQKLVSKGLSPLANPRNAASGSLRMKDPREVAER
NLDAFLYHISYVTHLHNQHDKSLETHGGSLSLLWDMGFRSPQKEKRIIKGIEGVIDYCLS
FEATRDNLPYEIDGMVIKVNELALQEKMGMTSHHPRWAIAFKFKARQATTELLDIEFQVG
RTGAITPVAKLKPVFLGGVTVSSISVHNEEYILQKDLRIGDQVLIERAGDVIPQIVKSLP
ELRRGHERFIQFPKKCPVCYSELFKEEGEAVWRCINIECTAQVVEKIIHFVSKDAMDIKS
LGEANVRKFYELGLLKDIPGIYKLDYFSIAQLDGFGKKSLDNLQTAIETSKQQPLYRLIY
ALGIRFIGETTAKTLANAVNHLMDFATKSEEELLLLEDVGTKVAKSIQHFFSNQQNLQML
KELENIGLQLVNIKKEVSADGTLQGQSFLFTGTLEQLKRSEAEAKVEAAGGIILNGVSSK
LNYLVVGTDAGSKLEKAKKINSIKIITEQEFIELIKGQ
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccgcagaacagacaaaagttttacaggaccaatcgaaggatatcttatcaaag
ctgaataattcagtgacattcaatgatctggctcttttaaaacaagtgctacgatttcat
gagtaccgttactacgtattgaatgaccccttactatctgactatgaatatgacttactc
tatcaatgtctggtaaaactggaggcagccaatcctgatatgattagtcccgactctcca
acacaaagagtaggtagtagtttaaaccagttcttcgaaacaacgcctcacctggttcca
atgcttagcctggacaatagttacaatgcagaggacttacaagacttcgatagaaaggca
agggaattaagtggtaccgatttgctcgaatattgcatagaacccaaatttgacggagcc
agtatttccctttattatgaaaacgatttattggttcgtgccgttaccagaggagatggt
gttgcaggagaggatattactaataatatcaaacagattaaatctatccctctttatgcg
ccattttctaccagaggtattcagcaaattgaaatcaggggagaagtaatcatgagcaaa
aatgcttttgagcaatacaaccaaaaactggtttctaaaggattgagcccattagccaat
ccaagaaatgcagcttcgggtagtttgcgcatgaaagatccgagagaagttgctgaaaga
aatttagatgcttttttataccatatcagctatgttacgcacttacataatcagcatgat
aaatccctggaaacccatgggggtagtctttccttattgtgggatatgggttttcgatct
ccgcagaaagagaaaagaatcattaaagggattgaaggcgtaattgattattgtctttca
tttgaagctactagggataatcttccttatgaaattgacgggatggttattaaagtaaat
gaactggctttacaggaaaaaatgggaatgacctctcatcaccccagatgggccattgca
ttcaagttcaaagccagacaggcaactactgaactattagatatagaatttcaggtagga
cgaacaggcgctataacccctgtagccaaactaaagcctgtctttctgggtggcgtaact
gtctctagtatttctgtacacaatgaagaatatattctgcaaaaagatctacgaattggc
gatcaggtattaatagaaagagcaggcgatgtaataccacaaattgtaaaaagtttgcca
gaactaagaagggggcatgagcgctttattcagtttcctaaaaaatgtcctgtttgctac
agtgaattattcaaagaagaaggtgaagccgtttggagatgcattaatattgaatgtact
gctcaggtagtagaaaagataattcactttgtgagcaaagatgccatggacatcaaaagc
ctgggagaagccaatgttcgtaagttctatgaacttgggttattaaaagatattcccgga
atttataaactggattatttttccattgcccaactggatggttttggaaaaaaatctctt
gacaacctgcagactgccatagagaccagcaaacaacaaccattgtatcggttaatctat
gctttaggaattcgttttattggagaaacaactgccaaaactttggccaacgcagtaaac
catctgatggattttgctaccaaatcggaggaggaactattgttattggaggatgtagga
acaaaagttgcaaaaagcatccaacattttttttcgaaccagcagaaccttcagatgcta
aaagaactagagaatattggattgcaattggtgaacataaaaaaagaagtaagtgctgac
gggacgcttcaaggacaaagttttttatttaccggcacattggagcagctgaaaagatca
gaagcagaagcaaaagttgaagcggcaggaggaataattttaaacggcgtaagcagcaaa
ctgaactacctggtagttggaacagatgccggcagtaagcttgaaaaagcaaaaaagata
aatagtataaaaattattacagaacaggaattcattgaattgattaaaggacaataa
DBGET
integrated database retrieval system
