Sedimentibacter sp. zth1: JYG23_10420
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Entry
JYG23_10420 CDS
T07110
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03030
DNA replication
sedz03410
Base excision repair
sedz03420
Nucleotide excision repair
sedz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYG23_10420 (ligA)
03410 Base excision repair
JYG23_10420 (ligA)
03420 Nucleotide excision repair
JYG23_10420 (ligA)
03430 Mismatch repair
JYG23_10420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedz03032
]
JYG23_10420 (ligA)
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_10420 (ligA)
Enzymes [BR:
sedz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JYG23_10420 (ligA)
DNA replication proteins [BR:
sedz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYG23_10420 (ligA)
DNA repair and recombination proteins [BR:
sedz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JYG23_10420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYG23_10420 (ligA)
MMR (mismatch excision repair)
DNA ligase
JYG23_10420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYG23_10420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_ligase
HHH
DNA_ligase_A_M
5_3_exonuc
UPF0758_N
Cactin_mid
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QSX05099
UniProt:
A0A974X8G7
LinkDB
All DBs
Position
complement(2151604..2153592)
Genome browser
AA seq
662 aa
AA seq
DB search
MIDEYRSLVEQIRYHNEKYYNQDNPEITDYEYDMLMQKLKKIEKEHPELVTLDSPTQKVG
GKAKREAGVLVAHRVPMLSLQDVFSKEEVYEFVNDMKRELVDPTFIVERKIDGLSMALRY
EDGEIKTAITRGDGINYGEDVTENAKVIKDVKKKLKESIPYLEIRGEVYMTNSSFEKVNE
TQELLGKKPFANPRNCSAGTLRQLDSNITKERNLSLFIFNVQEVKGISFQTHVESYEWLK
KQGIKVIENYSVCKTADEVWKAILEIGEQRGTFGYDIDGAVIKIDKFSDRELLGNTSKVP
KWSAAYKYPPEEKETVIRDIELSVGRTGRITPTAIFEPVRLCGTNVERATLHNQDFIDNL
DVRIGDTVLVYKSGEIIPKIKEVVLSKRPENTEKYKIPTVCPVCGALAVREQDTADIKCT
GTNCPAQLARHLINFVSRGAMDIKGFGTAYVEELINQGYIKNISDIYFLKNYRDELVEKG
IIGKEKNTDKLLGIIDKSKENEPNRLLVGFGISNVGKSTAKAIMKHFKTIDKLMNASVEE
LKDVNDIGEVSAVSIKKFFEDEENQRIIQILKDVEVNMSLEQDENESTKLEGLTFVVTGT
LPTLGRNEATELIQKNGGKVSGSVSKKTSYLLAGENAGSKLTKAQKLGIKIITEEELNNM
IK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgatagatgaatatagaagtttagttgaacaaattagatatcataacgaaaaatattat
aatcaagataatcctgaaataactgattatgagtatgatatgctaatgcagaaactaaag
aaaatagaaaaggaacaccctgaacttgttacattggattctcctactcaaaaagtaggt
ggaaaagcaaaaagagaagctggggtattagtggcacacagggtaccaatgcttagttta
caggacgtattctcaaaagaagaagtttatgaatttgtaaatgatatgaagagggaattg
gttgatcctacgtttattgttgagagaaaaatagatggattatcaatggcattaagatat
gaagacggagagataaaaacagctattacaagaggagatggaattaactacggagaagac
gtaaccgaaaatgccaaagttatcaaagatgtaaagaaaaaattaaaggaaagtatacct
tatttggaaattaggggtgaggtatatatgacaaattcatcatttgaaaaagttaatgaa
actcaagagttattaggcaaaaaaccttttgcaaatcctagaaattgttcagccggtact
ttaagacaattagatagtaacataactaaagagagaaatttatctttatttatttttaat
gtacaagaggttaagggaatttcttttcagacacatgtggagagctacgaatggcttaaa
aaacaaggaattaaggtaattgaaaactacagtgtgtgtaaaacagcagatgaggtttgg
aaagctattctagaaattggggagcaaagaggtacttttggttatgacatagatggagca
gttataaaaatagataaattctctgacagagaattacttggaaatacttcaaaggtgcca
aagtggtcggctgcttataagtacccaccagaagaaaaggaaacagtaataagagatata
gaattatctgttggaagaaccggaagaataactccaacagctatatttgaaccagttagg
ctctgtggtacaaatgtagaaagagcaacattgcacaatcaggactttattgacaatttg
gatgtaagaataggtgatacagtcttggtatataaaagtggggaaataattcctaaaata
aaagaggttgtgttatctaaaagacctgagaatacggagaagtataaaattcctactgtt
tgtcctgtttgcggagcacttgctgtaagagaacaagatacggcagatattaaatgtact
ggaacaaattgtcctgctcaacttgcaagacatctgataaactttgtaagcagaggtgca
atggatattaaaggcttcgggactgcatacgttgaggagttaattaatcaagggtatatt
aaaaatatatccgatatatattttttaaaaaattatagagatgagcttgttgaaaagggt
ataataggtaaagaaaaaaatacagataaacttttaggtataattgataaatcaaaagaa
aatgaaccaaatagattattagtaggctttgggatatctaatgtaggtaaatcaacagca
aaagctataatgaagcattttaagactattgataagcttatgaatgcttcagtagaagaa
cttaaagatgtaaatgatataggagaagtaagtgctgtatctataaagaaattctttgaa
gatgaagaaaatcaacgtataattcaaattttaaaggacgttgaagttaatatgtcttta
gaacaggatgagaatgagagtacaaagcttgagggcttaacgtttgtagtaacaggtaca
ttacctacacttggtagaaacgaagccactgaattaatacagaaaaacggtggaaaagta
tcggggagtgtttctaaaaaaacaagttatttattagctggggaaaatgcgggaagtaaa
ttaactaaagcacaaaaattaggcataaaaattattactgaagaagaattaaataatatg
ataaaataa
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