Salmonella enterica subsp. enterica serovar Newport SL254: SNSL254_A4019
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Entry
SNSL254_A4019 CDS
T00739
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
see
Salmonella enterica subsp. enterica serovar Newport SL254
Pathway
see03030
DNA replication
see03410
Base excision repair
see03420
Nucleotide excision repair
see03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
see00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNSL254_A4019 (ligA)
03410 Base excision repair
SNSL254_A4019 (ligA)
03420 Nucleotide excision repair
SNSL254_A4019 (ligA)
03430 Mismatch repair
SNSL254_A4019 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
see03032
]
SNSL254_A4019 (ligA)
03400 DNA repair and recombination proteins [BR:
see03400
]
SNSL254_A4019 (ligA)
Enzymes [BR:
see01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SNSL254_A4019 (ligA)
DNA replication proteins [BR:
see03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SNSL254_A4019 (ligA)
DNA repair and recombination proteins [BR:
see03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SNSL254_A4019 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNSL254_A4019 (ligA)
MMR (mismatch excision repair)
DNA ligase
SNSL254_A4019 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SNSL254_A4019 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ACF64200
UniProt:
B4SXE9
LinkDB
All DBs
Position
complement(3904306..3905991)
Genome browser
AA seq
561 aa
AA seq
DB search
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQVVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQYWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASATCQEQFISRLIW
LGSRSALGLDGMGEASWRALHQTHRFEHIFSWLTLTSAQIANTPGFAKGKSEQIWRQFNL
ARRQPFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRN
NLQIKALSRWLAAQHIPGFGS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcacccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggggttagcgcggttgacgatagtgtg
tacgaccaactcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcaccctgttgcgcacacgggc
gtacgtaaactcgcggaccgacaggtggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacaaccaaaagtggatggtgtagcggtaacgctggtttatcaaaacggtaaactg
gccagggctatcagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagtcaacacaaggcgcgcttgctaacgcggtgttgcagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaagaaatattccctggtggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcgttgccctttgtgacggatggcgta
gtgatacgcatggctaaagagcccgcgtcacaatactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcggttctgtgaaacgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggcggggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgaacggagtaagcctgtgccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggcaacgtgtcaggaacagtttatctccaggctgatatgg
ctggggtcacggtcggcgttgggtctggacggaatgggtgaagccagctggcgggccttg
catcagacgcatcgctttgagcatatcttctcctggcttaccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagccgtttacccgctggatcatggcgatggatatccccttaacgcaggcc
gcattacaggccagcggcgatcgttcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttaccagcgacgggcgagcgtcgtgccgggagagtcatcgactggcggaat
aatctgcagatcaaagcgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag
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