Secondary endosymbiont of Heteropsylla cubana: A35E_00023
Help
Entry
A35E_00023 CDS
T02336
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sehc
Secondary endosymbiont of Heteropsylla cubana
Pathway
sehc03030
DNA replication
sehc03410
Base excision repair
sehc03420
Nucleotide excision repair
sehc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sehc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A35E_00023
03410 Base excision repair
A35E_00023
03420 Nucleotide excision repair
A35E_00023
03430 Mismatch repair
A35E_00023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sehc03032
]
A35E_00023
03400 DNA repair and recombination proteins [BR:
sehc03400
]
A35E_00023
Enzymes [BR:
sehc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A35E_00023
DNA replication proteins [BR:
sehc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A35E_00023
DNA repair and recombination proteins [BR:
sehc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A35E_00023
NER (nucleotide excision repair)
GGR (global genome repair) factors
A35E_00023
MMR (mismatch excision repair)
DNA ligase
A35E_00023
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A35E_00023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AFP85349
UniProt:
J3Z4W6
LinkDB
All DBs
Position
complement(48518..50569)
Genome browser
AA seq
683 aa
AA seq
DB search
MKKIKQHILMLRKQLECWEDQYYVDASPEVPDSEYDRVMEKLHFLETKYPDLCTTHSPTQ
RVGGKAQSGFSKIHYAVPMLSLDNVFRKTDFLAFNKRVRKNIKCDDEITYCCELKIDGIA
VSLLYKTGKLVCASTRGDGVIGEDITDNVRTIASIPLVLKTYNKLPHLLELRGEVFISKT
GFLSLNKMAQQKGSKIFSNPRNAAAGSLRQLDPGITAIRPLKFFCYGFGQLEGGALQDSH
WKRLQQLKDWGVPVSRHIYRCKGTASVIEFYKKMYKMRSSFNFEIDGVVIKVDSIMFQKS
LGEITRAPRWAVAYKFPAQEQLTRLRDVEFQVGRTGVITPVGRLDPVQLSGAIVSNVTLH
NVNEINRLGIMIGDTVVVRRAGDVIPQIVSVVISVRSKEACPIIVPMRCPVCGSVAEKSL
RKGVLRCTGGLVCSAQRKEALRHFVSCKAMGVYGIGNKIIDQLVEKKLVNTPADLFQLTE
EVLISLDGVGIKSAKKLIEALRKARKTTLSRFLYALGIRDVGEVVALSLATEYRTLDALV
AADIDSLMRIKDIGKIIAKQVNQFFKEKHNIKVIRDLLSSGIQFDAYKSIAISFPVKRNF
FFGKTIVFTGALKSLSRDEARIRFTNLGAHISSTVSSKSDLVIAGEKAGSKLSKASKLNI
PVIDEREMIRLLKYSSNCIGSKY
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaattaaacaacatattctaatgttgcgaaagcaacttgaatgctgggaggat
cagtattatgtggacgcttctcctgaagtacctgatagtgaatatgatcgggttatggaa
aaactgcattttttggaaactaaatatccagatctatgcactactcattctccaacgcaa
cgagtaggaggaaaagcacaaagtggtttttcgaaaatacattatgcagttccgatgctt
tcattggataatgtttttagaaaaacggattttttagctttcaataagcgagtgcgcaaa
aatatcaaatgcgacgatgaaataacctattgttgtgaattaaagatagatggtattgcg
gtaagtctactttataaaactggtaagttagtgtgcgcttctacccgaggtgatggtgtt
attggtgaagatattaccgataatgtgcgtaccattgccagcatccccttggtgttaaaa
acttacaataagttaccgcatttattagagctacgtggagaagtgtttatctcgaaaact
ggttttttatctctaaataagatggcccaacaaaaaggctctaaaattttttcaaatccg
cgcaatgcagctgctggttctttacgccagttagatcctggtattactgctattcggcca
ttaaaatttttttgttatggtttcggtcagttagaaggaggagcattacaagacagtcac
tggaaaagacttcagcaattaaaagattggggggttccggttagtagacacatttatcgc
tgtaagggtactgcatctgtaatagagttttataagaagatgtataagatgaggtcatct
tttaattttgaaattgacggtgtagtaattaaagttgattctataatgtttcaaaaaagc
ttaggagagattacacgtgctccacgatgggctgtcgcttataaattcccggctcaagag
cagttaactcgcttgcgcgatgtggagtttcaagtaggaagaactggtgtaataacacca
gttggtcgtcttgatccagtgcaactatctggcgcaattgttagtaatgttactttacat
aatgttaatgaaatcaatcgtctaggtattatgattggagatactgtcgtggtgcgtcgt
gctggggatgtgatcccacaaattgttagtgtagtcatctctgtacgatcaaaagaggct
tgtccgataattgtccctatgcgatgtccagtatgtggttctgtagcagagaagtcatta
agaaaaggggtattacgttgcactggaggtttagtttgttcagctcagcgaaaagaggca
ttgagacattttgtttcgtgtaaagcgatgggagtttatggtataggtaataaaataatt
gatcagttagtagaaaaaaaattagtaaacactccagctgacctttttcaattaactgaa
gaagttttgatcagtttagatggtgttggaattaaatcggcaaaaaaattgatagaagcc
ttaagaaaagcacgaaagacgaccttgtctcgttttttatacgcacttggtattcgagat
gtgggagaggttgtagcacttagtttggctaccgaatatcgcacacttgatgcacttgtt
gcagctgatattgattcgctgatgcgtataaaggatattggcaaaattattgctaaacaa
gtaaatcaattttttaaagaaaaacataatattaaagtaatccgagatttattaagttca
ggtattcaatttgatgcttataaatctatagctatttcttttcctgtgaaaagaaatttc
ttttttggaaaaactattgtatttactggtgctttaaaaagcttatcacgggatgaggct
agaattcgctttactaaccttggagctcatattagctccactgtttcctctaaaagcgat
ttagttattgcgggagagaaagcaggctctaaattgtctaaagcatctaagttgaatatt
ccagtgattgacgagagggagatgatacgtcttctaaaatattcctcgaattgtatagga
agtaaatattag
DBGET
integrated database retrieval system
