Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_3001
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Entry
SPC_3001 CDS
T00862
Symbol
ygcF
Name
(GenBank) hypothetical protein
KO
K10026
7-carboxy-7-deazaguanine synthase [EC:
4.3.99.3
]
Organism
sei
Salmonella enterica subsp. enterica serovar Paratyphi C
Pathway
sei00790
Folate biosynthesis
sei01100
Metabolic pathways
Module
sei_M00988
PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Brite
KEGG Orthology (KO) [BR:
sei00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00790 Folate biosynthesis
SPC_3001 (ygcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sei03016
]
SPC_3001 (ygcF)
Enzymes [BR:
sei01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.99 Other carbon-nitrogen lyases
4.3.99.3 7-carboxy-7-deazaguanine synthase
SPC_3001 (ygcF)
Transfer RNA biogenesis [BR:
sei03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
SPC_3001 (ygcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
ACN47092
UniProt:
C0PXD4
LinkDB
All DBs
Position
complement(3029555..3030226)
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AA seq
223 aa
AA seq
DB search
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAK
TKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETS
GTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSD
DKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacccgattaacgagatgttccagaccctacaaggcgagggttattttaccggc
gtccccgctatttttattcgtttacagggatgtccggtcggctgtgcctggtgcgatacc
aaacacacctgggataaactgagcgatcgggaagtgtctctgttcagcattctggcaaaa
accaaagagagcgacaaatggggtgctgcgagcagtgaagacttgctggcagtaattaat
cgtcagggctataccgcgcgtcacgttgtcatcaccggtggagaaccctgtattcacgac
ctcatgccgctcaccgatctgcttgaaaagagtggttttagttgtcagattgagaccagc
gggacgcacgaagtgcgctgtacgcctaacacctgggtcacggtttcaccaaaagtgaat
atgcgcgggggatatgacgtgctttcccaggcgctggagcgcgccaatgaaatcaagcat
cccgttgggcgagttcgtgatattgaggcgctggatgaactgttagccacgttgagcgat
gataaaccgcgcgtgattgctttgcagcccattagccagaaagaagacgcgacgcgtctg
tgtattgaaacgtgtattgcacgtaactggcggctgtctatgcaaacgcataaatattta
aatattgcctga
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