Selenomonas sp. oral taxon 478: ADJ74_08995
Help
Entry
ADJ74_08995 CDS
T04017
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sele
Selenomonas sp. oral taxon 478
Pathway
sele03030
DNA replication
sele03410
Base excision repair
sele03420
Nucleotide excision repair
sele03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sele00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ADJ74_08995
03410 Base excision repair
ADJ74_08995
03420 Nucleotide excision repair
ADJ74_08995
03430 Mismatch repair
ADJ74_08995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sele03032
]
ADJ74_08995
03400 DNA repair and recombination proteins [BR:
sele03400
]
ADJ74_08995
Enzymes [BR:
sele01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ADJ74_08995
DNA replication proteins [BR:
sele03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ADJ74_08995
DNA repair and recombination proteins [BR:
sele03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ADJ74_08995
NER (nucleotide excision repair)
GGR (global genome repair) factors
ADJ74_08995
MMR (mismatch excision repair)
DNA ligase
ADJ74_08995
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ADJ74_08995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_5
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
BRCT_2
Nlig-Ia
5_3_exonuc
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AKT54568
LinkDB
All DBs
Position
1:1937334..1939367
Genome browser
AA seq
677 aa
AA seq
DB search
MSKIDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITKNS
PTRTVGGSAQREVGLLVPHDVPMLSLQDVFSEEEIHAFVDNVLAHFPAAEFVVEEKIDGL
SLALRYENGVLARAITRGDGIVQGEDVTANARVIDDVVQKLHDALPYFEVRGEVYMKRAA
FAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSDGRVFSSHTE
AYAFMQSQGIKTIANYRVCRTADAVWAAIEEIGVRRGSLPYDIDGAVVKVNSFAMREELG
VTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVERATLHNQ
DYIDSLDIRIGDTILVYKSGEIIPRVKAVLKDKRPQNSRPYVIPDVCPVCGAHAVREADT
ADMRCQNPVCPAQIENHLLNFVSRSAMDIKGLGAAAVIALVHAGYIHDVADIFSLHEHRE
ELVASGLIGRAKSVDQRLAAIEASKQNPPERLLTGLGIAGIGRAAAAALMQEFSSIDALQ
EAAHESPERILAVPDMGEITVQKLTEFFSSASACALLDRLRAAGVNFAGTRTERVGEALA
GKSFVITGTLPTLSREECSALITAHGGLVKGSVSKKTDYLVAGEAAGSKLKKAEDLGIPV
LDEAALHAMISEEKDGV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagattgatgaggtaaagacagagctgtcagagctgcggcgtaaaatacggaag
tattccaagcagtattatgacgataatgaatctgagatttcggattatgacttcgatatg
ctgatgatgcgcctgaaaaaacttgaggcagcgtatccggagctcattacgaagaactcg
ccgacacgcaccgtgggaggctcagcacagcgcgaagtcggcttactcgttcctcatgat
gttccgatgctctccctgcaggatgtattctccgaggaagagattcatgcgtttgtcgat
aatgtccttgcgcattttcctgcggcggaatttgtcgtcgaggaaaagatcgacggattg
tctctggcgcttcgctacgagaacggtgtgcttgcacgtgcgatcacacgaggtgacggc
attgtgcagggagaagacgtgacagcgaatgcacgcgtgatcgacgatgttgtacagaag
ctgcatgatgcactgccatattttgaggtgcgcggcgaagtctatatgaagcgcgccgca
tttgccgaggtcaatgagcggcaggaactcctcgggctgaagccctttgccaatccgcgc
aactgtgctgcaggaactctgcggcagctggattcgcgcatcacgaaggagcgcaggctg
tctatgttcgtattcaatttgcagcgcagtgacggccgcgtattttcctctcataccgag
gcgtatgcattcatgcagtctcaggggatcaagacgatagcgaattaccgcgtttgccgt
acggcggacgcggtctgggccgccatcgaggagatcggtgtgcggcgcggcagcctgccc
tatgacatcgatggagccgtggtcaaggtgaactcctttgccatgcgtgaggaacttggc
gtgacggcaaaggcgccgcgttgggcgattgcctataagtatccgccggaggaaaaggag
acggtacttcgcgatattgaactttccgtcggacggactgggcgcatcacaccgacggcc
gtgttcgatcctgtggggctctgcggaacgcgtgtcgagcgggcaaccctgcacaatcag
gactatattgacagtctggacatccgtatcggtgataccatactcgtctataagtcgggg
gaaatcatcccgcgcgtcaaggcggtgctgaaggacaaacgaccgcagaacagtcgcccc
tatgtgataccggatgtctgtcccgtctgtggcgcacatgccgtacgagaagcagatacg
gcggatatgcgctgccaaaatcctgtatgtccggcacagatcgagaaccatctcctgaac
ttcgtcagccgcagtgcaatggacatcaagggactaggagcggctgctgttattgccctt
gtccacgcaggatatatccatgatgttgcagatatcttttctctgcatgaacatcgagag
gagctcgttgcctctggactgatcggccgcgcaaagagtgtcgatcagcgtcttgcggca
atcgaagcgagtaagcaaaaccctcccgagcgtctattgacggggctgggaattgctggt
atcggacgtgcggcagctgccgcgctgatgcaggagttttcgtccattgatgccctgcag
gaggcggcgcatgagtccccggaacgcattctcgctgtcccggatatgggtgagattacg
gtacagaagctgacggagttcttctcctctgcatccgcctgtgccctgctggatcgcctg
cgtgcagctggggtaaactttgcgggaacacgaacggagcgtgtgggggaggcactcgcc
ggaaagagttttgtcatcacgggcacacttccgactctgtcccgtgaggaatgcagtgcc
cttatcacggcgcatggagggctggtgaagggttctgtttcaaagaagaccgattatctt
gtcgcgggagaagcggcaggaagcaagctgaaaaaggcggaggacctcggcattcccgtc
ttggacgaggcagcccttcacgccatgatttcggaagaaaaggacggcgtgtaa
DBGET
integrated database retrieval system
