Streptomyces endophytica: OJ254_01880
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Entry
OJ254_01880 CDS
T09208
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seng
Streptomyces endophytica
Pathway
seng03030
DNA replication
seng03410
Base excision repair
seng03420
Nucleotide excision repair
seng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OJ254_01880 (ligA)
03410 Base excision repair
OJ254_01880 (ligA)
03420 Nucleotide excision repair
OJ254_01880 (ligA)
03430 Mismatch repair
OJ254_01880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seng03032
]
OJ254_01880 (ligA)
03400 DNA repair and recombination proteins [BR:
seng03400
]
OJ254_01880 (ligA)
Enzymes [BR:
seng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OJ254_01880 (ligA)
DNA replication proteins [BR:
seng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OJ254_01880 (ligA)
DNA repair and recombination proteins [BR:
seng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OJ254_01880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OJ254_01880 (ligA)
MMR (mismatch excision repair)
DNA ligase
OJ254_01880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OJ254_01880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
UZJ29461
LinkDB
All DBs
Position
complement(433260..435476)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAQSKVPAAAREKHAQLAEQIEEHRFRYYVKDAPVISDAEFDRLLRSLEALEND
HPELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDQEELAAWAERLAGELGGAPKG
AGYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPNRLTGDRIP
ALVEVRGEVYFPLEKFLQLNERLVADGKPPFANPRNAAAGSLRQKDPKITASRPLHMVVH
GLGARDGLEIDRLSEAYGLLKEWGLPTATHNRVVDSLDAVREFIAHYGDPETRRTAVEHE
IDGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGGEREFV
MPAECPECGTALQPAKEGDIDLRCPNTRSCPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPAEAPLKDEGDLFGLSVEQLLPIKSYVLAPDSGLPKRDPKTGEEKVVTFFANQKG
EPKKNTLAMLENIQAAKERPLARILTGLSIRHVGPVAAEALAREFRSIDRIRDAEEAELA
AVDGVGPTIAASLKQWFAEDWHREIIEKWRAAGVRMEEEQTGDEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPEAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcgcaatccaaggtgcccgcagcggcgcgggagaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccgctactacgtgaaggacgctccg
gtcatcagcgacgccgagttcgaccggctgctgcgctccctggaggccctggagaacgat
caccccgagctgcgcaccccggattccccgacccagaaggtcgccggtgcgtacgcgacg
gaattcaccgaggtcgagcaccgcgagcggatgctctcgctggacaacgccttcgaccag
gaggagttggcggcctgggcggagcggctcgccggcgagctgggcggcgcccccaagggt
gcgggctaccacttcctgtgcgagctcaaggtcgacggcctcgccgtcaacctcacctac
gagcacggccggctgacccgcgccgccacccgtggcgacggccgcaccggcgaggacatc
acccccaatgtccggacgatcgccgacattcccaaccgcctgacgggcgaccggattccg
gccctggtcgaggtgcgcggcgaggtctacttccccctggagaagttcctccagctcaac
gagcgcctggtggccgacggcaagccgccgttcgccaacccccgcaacgccgcggccggt
tcgctgcgccagaaggaccccaagatcacggccagccgcccgctccacatggtcgtccac
ggcctcggcgcccgcgacggcctggagatcgaccggctctcggaggcgtacggcctgctc
aaggagtggggcctgccgacggccacgcacaacagggtcgtcgactccctcgacgcggtg
cgggagttcatcgcccactacggcgatcccgagacccgccgcacggccgtggagcacgag
atcgacggcgtggtcgtcaagctggacgagatccggctccaggggcggctgggctcgacc
tcgcgcgccccgcgctgggcgatcgcctggaagtaccccccggaggaggtcaacaccaag
ctggtggacatccgggtcggcgtcggccgcaccggccgggtcacgccgtacgcggtcgtc
gagccggtcacggtcgccgggtccgaggtggagttcgcgaccctgcacaaccaggacgtg
gtcaaggccaagggggtgctgatcggggacaccgtcgtgatccgcaaggccggcgacgtc
atccccgagatcctcggcccggtggtcgatctgcgggacggcggcgagcgggagttcgtg
atgccggccgagtgccccgagtgcggcacggccctgcagcccgccaaggaaggggacatc
gacctccgctgccccaacacccgctcctgccccgcgcagatccgtgagcggctgttctat
ctcgccggccgcaaatgcctggacatcgagaatttcggatatgtcgccgccacggccctc
agtcagccgctggagccggccgaggcgccgctgaaggacgagggtgatctgttcgggctc
tccgtcgagcagctgctgcccatcaagtcgtacgtcctcgcccccgattccgggctgccc
aagcgggacccgaagaccggcgaggagaaggtcgtcacgttcttcgccaaccagaagggc
gagccgaagaagaacaccctcgcgatgctggagaacatccaggccgccaaggagcgcccg
ctggcccgcatcctgaccggtctgtcgatccggcacgtgggcccggtggcggccgaggcg
ctggcccgcgagttccgctcgatcgaccgcatccgggacgcggaagaggccgaactggcc
gccgtggacggcgtcgggcccaccatcgccgcgtcgttgaagcagtggttcgccgaggac
tggcaccgcgagatcatcgagaagtggcgggccgccggcgtccgaatggaggaggagcaa
acgggtgacgagggcccacgccccctcgaaggcgtcaccgtcgtcgtaacgggcacactt
cagtcacacacaagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgacc
ggttccgtttcgaagaagaccggtttcgtggtggtgggcgacaaccccggttcgaagtac
gacaaggcgatgcagttgaaggtcccggtcctggacgatgacggcttcgcggtgctgctg
gaacagggtcccgaagcggcacgagcggtagctgtcactccgcctgaggaggagtga
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