Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_21440
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Entry
CFSAN001992_21440 CDS
T02479
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj03030
DNA replication
senj03410
Base excision repair
senj03420
Nucleotide excision repair
senj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFSAN001992_21440 (ligA)
03410 Base excision repair
CFSAN001992_21440 (ligA)
03420 Nucleotide excision repair
CFSAN001992_21440 (ligA)
03430 Mismatch repair
CFSAN001992_21440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
senj03032
]
CFSAN001992_21440 (ligA)
03400 DNA repair and recombination proteins [BR:
senj03400
]
CFSAN001992_21440 (ligA)
Enzymes [BR:
senj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFSAN001992_21440 (ligA)
DNA replication proteins [BR:
senj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFSAN001992_21440 (ligA)
DNA repair and recombination proteins [BR:
senj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFSAN001992_21440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFSAN001992_21440 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFSAN001992_21440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFSAN001992_21440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AGF84558
LinkDB
All DBs
Position
4442938..4444953
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQA
ATIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgaatat
ctgtatcatgtgatggatgcgccggagattcccgacgccgaatatgaccgcctgatgcgg
gaactgcgagagctggaggcgcaacgtccggaccttatcacgccggattcgcccacgcag
cgcgttggcgcggcgccgctgacggcattcaaccagattcgccatgaagtaccgatgctg
tcgctcgataacgtatttgatgaagaaagcttcctggcgtttaacaagcgagtgcaggat
cgtctaaaaagcacggaaaatgtcatctggtgctgcgagctaaaactggatggcctggcg
gtcagcattctgtatgaaaacggcgtgctggtgagcgctgcgacgcgtggcgacggcacc
accggtgaagatatcacttcaaacgtgcgcacgattcgcgccattcctttaaagctgcat
ggcgataacattccggcgcgtcttgaagttcgcggagaggtatttttaccgcaggccggg
ttcgaaaagatcaatgaagacgcgcgccgtactggcggcaaagtgtttgctaacccgcgt
aacgcggcggcgggctcgctgcgtcagctcgatccacgtattacggcgaagcgaccgcta
acatttttctgctacggcgtcggtattctggaaggcggcgagttgccggatacgcatctg
ggacgtttgctgcaatttaaagcgtgggggttaccggtcagcgatcgcgtgacgctgtgc
gattctccccaggcggtactggatttttatcgcaacgtcgaaaaagatcgccccacgctc
ggttttgatatcgacggcgtggtgattaaggtcaactcgctggctttgcaggaacagctg
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaattccctgctcaggagcag
atgacttttgtgcgcgatgttgagtttcaggtcgggcgcaccggggcgattacgccggtg
gcgcgtctggaaccggttcaggtggctggtgtgctggtcagcaatgccacgttgcataat
gccgatgaaattgaacggcttggcttgcgtattggcgataaggtggttatccgtcgggca
ggagatgtgatccctcaggtggtcaacgtggttctgtccgaacgccctgaagagacgcgt
ccgattgtgtttccaacgcactgtccggtgtgcggatcggacgtagagcgcgttgaaggc
gaagccgttacccgttgtaccggcgggctgatttgcggcgcgcagcgtaaagagtcgctg
aaacattttgtgtcgcgccgggcgatggatgtagacgggatgggcgataagatcatcgac
caactggtggaaagggagtatgtccatacgccagcggatctgttccgtctgacggcgggt
aaactgaccggcctggaccgaatggggccaaagtccgcgcaaaatgttgtaaacgcgctg
gaaaaagccaaagcgacgacctttgcgcgttttctctatgcgctgggcatccgtgaagtg
ggtgaggcgacggcggcggggctggcggcttatttcggcacgctggaggcgctgcaggcc
gccaccattgacgagttgcagaaagtacctgacgtggggattgtggtcgctacgcacgtc
tttaacttttttgccgaagagagtaatcgtgacgtgattgggcagctactggcggaaggg
gttcactggcccgcgccggtagtcattaatgtgcaagagatcgatagcccgtttgccggt
aaaaccgtggtactaaccggtagcctgagccagatgtcccgcgatgacgctaaagcgcgt
ttagtggcgctgggcgcgaaagtggcaggcagcgtatcgaagaaaaccgatctggtgatt
gccggtgaagcggcgggttccaaactgaccaaagcgcaggaactgggtattaccgtgatt
gatgaagcggaaatgatccgcttactgggtgcctga
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integrated database retrieval system
