Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_1390
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Entry
SN31241_1390 CDS
T02779
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
senn
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Pathway
senn03030
DNA replication
senn03410
Base excision repair
senn03420
Nucleotide excision repair
senn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
senn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SN31241_1390
03410 Base excision repair
SN31241_1390
03420 Nucleotide excision repair
SN31241_1390
03430 Mismatch repair
SN31241_1390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
senn03032
]
SN31241_1390
03400 DNA repair and recombination proteins [BR:
senn03400
]
SN31241_1390
Enzymes [BR:
senn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SN31241_1390
DNA replication proteins [BR:
senn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SN31241_1390
DNA repair and recombination proteins [BR:
senn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SN31241_1390
NER (nucleotide excision repair)
GGR (global genome repair) factors
SN31241_1390
MMR (mismatch excision repair)
DNA ligase
SN31241_1390
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SN31241_1390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGS27114
LinkDB
All DBs
Position
145100..146461
Genome browser
AA seq
453 aa
AA seq
DB search
MVEQWMRGRSELWVQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQS
TQGALANAVLQGEIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPD
GPANMPERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIRMAKEP
ASQYWRPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVN
IGSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASA
TCQEQFISRLIWLGSRSALGLDGMGEASWRALHQTHRFEHIFSWLTLTSAQIANTPGFAK
GKSEQIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATG
ERRAGRVIDWRNNLQIKALSRWLAAQHIPGFGS
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
gtggtagaacagtggatgcgcgggcgcagcgagctttgggtacaaccaaaagtggatggt
gtagcggtaacgctggtttatcaaaacggtaaactggccagggctatcagccggggtaac
ggactacaaggcgaggactggacgccaaaaattcgcctgatcccctctataccgcagtca
acacaaggcgcgcttgctaacgcggtgttgcagggcgaaatctttctacagcgcgaggga
catatccagcaacggatgggcgggatgaatgcgcgctcgaaagtcgcaggaatgttaatg
cgccaggataacgcctccgcgctaaattcgttgggtatttttatttgggcgtggccggac
ggtccggcaaatatgcccgaaagattaagccaacttgctaaggctggattcagtctgacg
aagaaatattccctggtggtaaaagatgccagcgaggtcgagcgggcgcgccagtcatgg
ctgacgtcagcgttgccctttgtgacggatggcgtagtgatacgcatggctaaagagccc
gcgtcacaatactggcgacccgggcagggcgactggctggcagcatggaaatatccgcca
gtagcgcaggtcgcgcaagtgagcgctattcagttctcggtggggaaaagcggcaaaatt
accgtagtagcgtcgcttgtccccgttatattggatgataagcgggttcagcgggtcaat
atcggttctgtgaaacgttgggaagcgtgggatatcgcgccgggcgatcagatcctggtg
agtctggcggggcaaggcattccccggcttgatgaggtcgtctggcggagtcgtgaacgg
agtaagcctgtgccgcctgatagccatttcaactcgctgacctgcttttacgcgtcggca
acgtgtcaggaacagtttatctccaggctgatatggctggggtcacggtcggcgttgggt
ctggacggaatgggtgaagccagctggcgggccttgcatcagacgcatcgctttgagcat
atcttctcctggcttaccctgacgtcagcgcaaatagccaacacgccaggctttgctaaa
ggaaaaagcgagcagatatggcggcaatttaacctggcgcgccggcagccgtttacccgc
tggatcatggcgatggatatccccttaacgcaggccgcattacaggccagcggcgatcgt
tcatgggagcagttattaatgcgaacagagcaacactggcggcagttaccagcgacgggc
gagcgtcgtgccgggagagtcatcgactggcggaataatctgcagatcaaagcgctgagc
agatggctggctgctcagcatattcccggatttgggtcttag
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