KEGG   Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_35320
Entry
SN31241_35320     CDS       T02779                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
senn  Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Pathway
senn03030  DNA replication
senn03410  Base excision repair
senn03420  Nucleotide excision repair
senn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:senn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SN31241_35320
   03410 Base excision repair
    SN31241_35320
   03420 Nucleotide excision repair
    SN31241_35320
   03430 Mismatch repair
    SN31241_35320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:senn03032]
    SN31241_35320
   03400 DNA repair and recombination proteins [BR:senn03400]
    SN31241_35320
Enzymes [BR:senn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SN31241_35320
DNA replication proteins [BR:senn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SN31241_35320
DNA repair and recombination proteins [BR:senn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SN31241_35320
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SN31241_35320
   MMR (mismatch excision repair)
    DNA ligase
     SN31241_35320
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SN31241_35320
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH Prok-E2_C DZR_2
Other DBs
NCBI-ProteinID: AGS30504
LinkDB
Position
complement(3563636..3565651)
AA seq 671 aa
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQA
ATIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVI
DEAEMIRLLGA
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggaaccaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgaatat
ctgtatcatgtgatggatgcgccagagattcccgacgccgaatatgaccgcctgatgcgg
gaactgcgagagctggaggcgcaacgtccggaccttatcacgccggattcgcccacgcag
cgcgttggcgcggcgccgctgacggcattcaaccagattcgccatgaagtaccgatgctg
tcgctcgataacgtatttgatgaagaaagcttcctggcgtttaacaagcgagtgcaggat
cgtctaaaaagcacggaaaatgtcatctggtgctgcgagctaaagctggatggcctggcg
gtcagcattctgtatgaaaacggcgtgctggtgagcgctgcgacgcgtggcgacggcacc
accggtgaagatatcacttcaaacgtgcgcacgattcgcgccattccgttaaagctgcac
ggcgataacattccggcgcgtcttgaagttcgcggagaggtatttttaccgcaggccggg
tttgaaaagatcaatgaagacgcgcgccgcactggcggcaaagtgtttgctaacccgcgt
aacgcggcggcgggctcgctgcgtcagctcgatccgcgtattacggcgaagcgaccgcta
acatttttttgctacggcgtcggtattctggaaggcggcgagttgccggatacgcatctg
ggacgtttgctgcaatttaaagcgtgggggttaccggtcagcgatcgcgtgacgctgtgc
gattctccccaggcggtactggatttttatcgcaacgtcgaaaaagatcgccccacgctc
ggttttgatatcgacggcgtggtgattaaggtcaactcgctggctttgcaggaacagctg
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaatttcctgctcaggagcag
atgacttttgtgcgcgatgttgagtttcaggttgggcgcactggggcgattacgccggtg
gcgcgtctggaaccggttcaggtggctggtgtgctggtcagcaatgccacgttgcataat
gccgatgaaattgagcgacttggcttgcgcattggcgataaggtggttatccgtcgggca
ggcgatgtgatccctcaggtggtcaacgtggttctgtccgaacgccctgaagagacgcgt
ccgattgtgtttccaacgcactgtccggtgtgcggatcggacgtagagcgcgttgaaggc
gaagccgttacccgttgtaccggcgggctgatttgcggcgcgcagcgtaaagagtcgctg
aaacattttgtgtcgcgccgggcgatggatgtagacgggatgggcgataagatcatcgac
caactggtggaaagggagtatgtccatacgccagcggatctgttccgtctgacggcgggt
aaactgaccggcctggaccgaatggggccaaagtccgcgcaaaatgttgttaacgcgctg
gaaaaagccaaagcgacgacttttgcgcgttttctctatgcgctgggcatccgtgaagtg
ggtgaagcgacggcggcggggctggcggcgtacttcggcacgctggaggcgctgcaggct
gccaccattgacgagttgcagaaagtacccgacgtggggattgtggtcgctacgcacgtc
tttaacttttttgccgaagagagcaatcgtgacgtgattgggcagctactggcggaaggg
gttcactggcccgcgccggtagtcattaatgtgcaagagattgatagcccgtttgccggt
aaaaccgtggtactaaccggtagcctgagccagatgtctcgcgatgacgctaaagcgcgt
ttagtggcgctgggcgcgaaagtggcaggcagcgtatcgaagaaaaccgatctggtgatt
gccggtgaagcggcgggttcgaaactggccaaagcgcaggaactgggcatcaatgtcatt
gatgaagcggaaatgatccgcttactgggtgcctga

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