Salmonella enterica subsp. enterica serovar Enteritidis EC20090193: AU37_18375
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Entry
AU37_18375 CDS
T03732
Symbol
ligB
Name
(GenBank) aromatic ring-opening dioxygenase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seno
Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
Pathway
seno03030
DNA replication
seno03410
Base excision repair
seno03420
Nucleotide excision repair
seno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AU37_18375 (ligB)
03410 Base excision repair
AU37_18375 (ligB)
03420 Nucleotide excision repair
AU37_18375 (ligB)
03430 Mismatch repair
AU37_18375 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seno03032
]
AU37_18375 (ligB)
03400 DNA repair and recombination proteins [BR:
seno03400
]
AU37_18375 (ligB)
Enzymes [BR:
seno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AU37_18375 (ligB)
DNA replication proteins [BR:
seno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AU37_18375 (ligB)
DNA repair and recombination proteins [BR:
seno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AU37_18375 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AU37_18375 (ligB)
MMR (mismatch excision repair)
DNA ligase
AU37_18375 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AU37_18375 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AHP75867
LinkDB
All DBs
Position
complement(3812260..3813945)
Genome browser
AA seq
561 aa
AA seq
DB search
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQHWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIDSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASETCQEQFISRLVW
LGSRSALGLDGMGEASWRALHQTHRFKHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNL
ARRQSFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRN
NPQIKTLSRWLAAQHIPGFGS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcacccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggtgttagcgcggttgacgatagtgtg
tacgaccagctcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcaccctgttgcgcacacgggc
gtacgtaaactcgcggaccgacaggcggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacagccaaaagtggatggtgtagcggtaacgctggtttatcaaaacggtaaactg
accagggctatcagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagacaacacaaggcgcgcttgctaacgcggtgttgcagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaataaatataccctggcggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcattaccctttgtaacggatggcgta
gtgatacgcatggctaaagaacctgcgtcacaacactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcgattctgtgaagcgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggcggggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgagcggagtaagcctgtaccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggaaacgtgtcaggaacagtttatctccaggctggtatgg
ctggggtcacggtcggcgttgggtctggacggaatgggcgaagccagctggcgggccttg
catcagacgcatcgctttaagcatatcttctcctggcttgccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagtcgtttacccgctggatcatggcgatggatatccccttaacgcaggct
gcattacaggccagcggcgatcgttcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttaccagcgacgggcgagcgtcgtgccgggagagtcatcgactggcggaat
aatccgcagatcaaaacgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag
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