Serratia entomophila: KHA73_17400
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Entry
KHA73_17400 CDS
T08209
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
senp
Serratia entomophila
Pathway
senp03030
DNA replication
senp03410
Base excision repair
senp03420
Nucleotide excision repair
senp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
senp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KHA73_17400 (ligA)
03410 Base excision repair
KHA73_17400 (ligA)
03420 Nucleotide excision repair
KHA73_17400 (ligA)
03430 Mismatch repair
KHA73_17400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
senp03032
]
KHA73_17400 (ligA)
03400 DNA repair and recombination proteins [BR:
senp03400
]
KHA73_17400 (ligA)
Enzymes [BR:
senp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KHA73_17400 (ligA)
DNA replication proteins [BR:
senp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KHA73_17400 (ligA)
DNA repair and recombination proteins [BR:
senp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KHA73_17400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KHA73_17400 (ligA)
MMR (mismatch excision repair)
DNA ligase
KHA73_17400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KHA73_17400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UIW17193
LinkDB
All DBs
Position
complement(3584262..3586283)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQKINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELIAADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKNEEPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ARLMQFREWGLPVSDRARCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVAFPRHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVEGMGDKIIEQLVEKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGESTAANLASHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRHFLDETLNQKVINELVGAEIGISWPAPVVVVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaaaaaatcaatcaactacgagcctcattgcgccatcacgaatac
cagtatcacgtgcttgacgcgccggaggtgccggatgcggaatacgatcgcctgatgcgt
gagttgcgcgagctggaaagcgcccatccggaactgatcgccgccgattcgccgacccaa
cgcgtgggcgcggcgccgctggcggccttcgatcaggtgcgccacgaagtgccgatgctg
tcgctggacaacgtgttcgatgaagaaagcttcctggcgttttacaagcgcgtgcaggat
cggttgaaaaacgaagagccgctgaccttctgctgcgagctcaagctggacggcctggcg
gtcagcctgctgtacgaagacggcgagctggtgcgcgcggctacgcgcggcgacggcacc
accggggaaaacatcacgtccaacgtgcgcaccatccgcgctatcccgctgcgcctgacc
ggcgccaacatcccgcgccggctggaagtgcgcggtgaagtctttatgccgcaggccggt
tttgaacaaatgaacgaagaggcgcggcgcaaggacggcaagattttcgccaacccgcgc
aacgccgccgccggttcgctgcgccagctcgatccgcgcatcaccgccaagcggccgcta
accttcttctgctacggcgtcggcctgctggagggcggcgagctgccgcgcagccacttc
gcgcggctgatgcagttcagagaatggggcctgccggtcagcgatcgcgcccgttgctgc
accggcagcgacgaggtgctggcgttctaccgccaggtggaacaggaccgcgcgcagctc
ggctttgatatcgacggcgtggtggtgaaaatcgacgacatcgatctgcaagaaaccctg
ggcttcgtagcgcgcgcgccgcgttgggcgacggccttcaaattcccggcgcaggaacag
attaccgtggtgcgcgaggttgaattccaggtggggcgcaccggcgccatcactccggtg
gcgcggctggagccggtgctggtggcgggggttaccgtcagcaacgccacgctgcacaac
gccgacgagattgaacgcctgggcctgcgcattggcgacacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggggtgctggaagaccgccgcccgcaggacgcgcgc
gaagtggcgtttccgcggcactgcccggtgtgcggttccgacgttgagcgggtggaaggc
gaagcggtggcgcgctgcaccggcgggttgatctgcgccgcgcagcgcaaagaggcgctg
aagcatttcgtctcccgccgggcgctggacgtcgaaggcatgggcgacaagatcatcgaa
caattggtggaaaaagagtacgtcaaaaatccggccgatctgttccgcctgtccgccggc
attctgaccgggctggatcgcatggggccgaaatcggcgcagaatctggtcaacgcgctg
gaaaaatccaagcagaccaccttcgcgcgtttcctgtatgcgttgggtatccgcgaggtc
ggtgagtcgaccgccgccaacctggcatcgcacttcggctcgctggagaagctgttcgcc
gccgatatcgaggcgctgaaagaggtgccggacgtcggcgaagtggtggcgaagcacacg
cgccatttcctcgacgaaaccttgaatcaaaaggtcatcaatgagctggttggcgccgaa
atcggcatcagctggccggcgccggtggtagtggtggcggaagaaatcgacagcccgttc
gccggcaaaaccgtagtgctgaccggttcgcttagccagctctcgcgcgacgaagccaag
gatcgcctgacggcgctgggtgccaaggtcagcggcagcgtatcgaagaaaaccgatctg
gtgatcgcgggtgaagcggccggctccaagctggcgaaggcgcaggagctgggtatcgcg
gtgatcgacgaagcggaaatgatccgcctgttgggtgcctga
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integrated database retrieval system
