Streptococcus equinus: A6J79_00420
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Entry
A6J79_00420 CDS
T06203
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seqi
Streptococcus equinus
Pathway
seqi03030
DNA replication
seqi03410
Base excision repair
seqi03420
Nucleotide excision repair
seqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6J79_00420 (ligA)
03410 Base excision repair
A6J79_00420 (ligA)
03420 Nucleotide excision repair
A6J79_00420 (ligA)
03430 Mismatch repair
A6J79_00420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seqi03032
]
A6J79_00420 (ligA)
03400 DNA repair and recombination proteins [BR:
seqi03400
]
A6J79_00420 (ligA)
Enzymes [BR:
seqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6J79_00420 (ligA)
DNA replication proteins [BR:
seqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6J79_00420 (ligA)
DNA repair and recombination proteins [BR:
seqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6J79_00420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6J79_00420 (ligA)
MMR (mismatch excision repair)
DNA ligase
A6J79_00420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6J79_00420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Relaxase_C
E1-E2_ATPase
5_3_exonuc
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
ARC33030
LinkDB
All DBs
Position
complement(74881..76839)
Genome browser
AA seq
652 aa
AA seq
DB search
MEKRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQADSPTHRVG
GLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKDEFPNADYMAELKIDGLSISLTYV
DGILQVGATRGDGSVGENITENVKRISDIPLKLDQPLNITVRGECYLPRAEFERINIQRQ
ENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLTQNDVLNEVAELGFS
VNPRRIVTSSMDEIWDFIQAVGEDRDHLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLRVVESKRTTQEPMEVPTQCPSCGSGLLHFEDEVALRCINPSCPA
QIKEGLIHFASRDAMNIAGMGPSVVEKLFKAELVKDVADIYGLNSQDFLQLEGFKEKSAE
KLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLLEAFGSIQELASADVEAIAAVDGLGE
VIAKSIQRYFAKEEAQVLMKELESYGVNLSYLGQKVADDAILSSKTVVLTGKLEHLKRSE
AKAKLEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgaatgaaagagctggttgttaaacttaaccagtatgcaaaagagtattat
acggaagataatccatcagtgtcagatgccgagtatgataagctttatcgtgagcttgta
gctttggaggctgaacatccagaacttgttcaagcagatagtccaacacatcgtgtggga
gggttggtacttgatggttttgaaaaatatcaacatgagtatccgctttatagtttgcag
gatgctttttcacgagaagagctagatgcctttgataagagggttaaggacgaatttcct
aatgctgattatatggctgaactcaaaatcgatgggctttctatctcgttgacctatgtg
gatggtattcttcaggtaggtgcgacacgtggtgatggttctgtaggtgagaatatcact
gaaaatgtcaagcgtatctcagatattcctctgaagttggaccaacctcttaatattacg
gtgcgtggggagtgttacctgccacgggctgagtttgaacgcatcaacatccaacgccag
gaaaatggtgaggccgaatttgccaatccacgtaatgctgcagcaggaactcttcgtcaa
ttagataccaaagtggttgcagagcgtcgtttggcgactttcctttatcaggaagctagt
ccaacggagcgtctaacacaaaatgatgtcttaaatgaagtggcagaactcggtttctct
gttaatccacgacgcattgtcacatcatcgatggatgagatttgggactttattcaagct
gttggagaagatcgtgatcacttggcctatgacattgatggtgttgtcatcaaagtcaat
agtttggctatgcaagaagaactcggttttacagttaaggcgccacgttgggccattgct
tataaattcccggctgaggaaaaggaagcagagcttctctcagtggactggcaggtaggt
cgtacgggtgtagtaacgccgactgctaatttgactccagtgcaattagcggggacaacg
gttagtcgggccacccttcataatgtagattatattgccgaaaaagacattcgtatcggt
gataccgtaattgtctacaaagctggtgatattatccctgctgtacttcgtgtagtagag
agtaagcgtacgacacaggagccgatggaagtaccgactcaatgtccatcttgtggcagt
ggtcttttacattttgaagatgaagttgccctacgttgtatcaatccttcttgccctgct
cagatcaaggaaggcctgattcattttgcctctcgagatgccatgaacatcgcaggtatg
ggaccttcagtggttgaaaagctctttaaagctgaattggttaaagatgtggctgatatc
tatggcttgaacagtcaggatttccttcaattggaaggtttcaaggaaaagtcggctgaa
aaactttacgcagccattcaagcatcaaaagaaaattctgcagagaaattgctctatggc
ttgggtattcgtcatgttggcgccaaagttagtaagcagttgctagaagcttttggcagc
atacaagagttagccagtgcagatgtcgaggctattgctgctgtagatggtttaggagag
gttattgccaagtccatccagcgctattttgctaaggaggaggctcaagttcttatgaaa
gaactggaatcctatggcgttaatttgtcctatcttggacaaaaggtggcagatgatgct
atcttatcttctaagacagttgttttgacaggaaaattggagcaccttaaacgtagtgaa
gcaaaggcaaaactagaagctctgggtgctaaggtgacaggttctgtctctaagaaaaca
gatttagtagttgctggtagtgatgccggaagtaagttggaaaaagcacaaagcctagga
attgaagtaaaagatgaggcttggttgctggatttatag
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