Serratia sp. B1: QEP77_04625
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Entry
QEP77_04625 CDS
T10611
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
serb Serratia sp. B1
Pathway
serb03030
DNA replication
serb03410
Base excision repair
serb03420
Nucleotide excision repair
serb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
serb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QEP77_04625 (ligA)
03410 Base excision repair
QEP77_04625 (ligA)
03420 Nucleotide excision repair
QEP77_04625 (ligA)
03430 Mismatch repair
QEP77_04625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
serb03032
]
QEP77_04625 (ligA)
03400 DNA repair and recombination proteins [BR:
serb03400
]
QEP77_04625 (ligA)
Enzymes [BR:
serb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QEP77_04625 (ligA)
DNA replication proteins [BR:
serb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QEP77_04625 (ligA)
DNA repair and recombination proteins [BR:
serb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QEP77_04625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QEP77_04625 (ligA)
MMR (mismatch excision repair)
DNA ligase
QEP77_04625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QEP77_04625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WIF07613
LinkDB
All DBs
Position
952575..954596
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSDRAQRRTGSEEVLAFYRQVERDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVAAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgagccacattgcgccatcatgaatac
cagtatcatgtgctggatgcgcccgaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctcgagagcgcgcatccggagctgatcaccgccgattcgccgacccag
cgcgtgggcgcggcgccgctggcggcgtttgaccaggtgcgtcacgaagtgccgatgctg
tcgctggacaacgtgttcgacgaagagagcttcctggcgttttacaagcgcgtgcaggac
aggctcaagagcagcgatccgctgaccttctgctgcgagctgaagctggacggcctggcg
gtcagcctgctgtacgaagacggcgagctggtgcgtgcggcgacgcgcggcgacggcacc
accggcgagaacatcacctccaacgtgcgcaccattcgcgccatcccgctgcgcctgacc
ggcgacaacatcccgcgccggctggaagtgcgcggcgaagtgttcatgccgcaggccggg
tttgaacagatgaacgaagaggcgcggcgcaaagacggcaaggtgttcgccaatccgcgc
aacgccgccgccggttcgcttcgtcagctcgatccgcgcattaccgccaaacgcccgctg
accttcttctgctatggcgtcgggctgctggaaggcggcgagctgccgcgcagccacttt
gaacgcctgatgcagttcaaggcctggggcctgccggtcagcgatcgcgcccagcgccgc
accggcagcgaggaagtgctggcgttctatcgccaggtcgagcgggaccgcgcacagctc
ggtttcgacatcgacggcgtggtgatcaagattgacgacatcgatctgcaggaaacgctg
ggcttcgtggcgcgtgcgccgcgctgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtggtgcgcgaagtggagtttcaggttggccgcaccggcgcgattacgccggtg
gcgcgtcttgagccggtgctcgtggccggggtgaccgtcagcaacgccaccttgcacaac
gccgatgaaattgagcggttggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggcgtgctggaagaccgtcggccgcaggatgcgcgc
gaagtggtgttcccgctgcactgcccggtgtgcggttccgacgttgagcgcgtggaaggc
gaggccgtggcgcgttgcaccggcggtcttatctgcggcgcgcagcgcaaagaggcgttg
aagcatttcgtttcccgccgcgcgctggacgttgaaggcatgggcgacaagatcatcgag
cagctggtggacaaggagtacgtgaagaacccggccgacctgttccggctgtccgccggc
attctgaccggcctggatcggatggggccgaaatcggcgcagaatctggtcaacgcgctg
gagaaatccaagcagaccaccttcgctcgcttcctgtatgcgctcggcattcgcgaggtc
ggcgaagcgaccgccgccaacctggcggcgcatttcggatcgctcgagaagctgttcgcc
gccgacatcgaggcgctgaaagaggtgccggacgtcggcgaagtggtggccaaacacacg
cgcaacttcctcgatgaagcgctcaatcagcaggtgatcaacgagttggtgggcgccgag
atcggcatccactggccggcgccggtggtggtggcggcggaagagatagacagcccgttc
gccggcaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgacgaggccaaa
gatcgcctgacggcgctgggcgccaaggtcagcggcagcgtgtcgaagaaaaccgatctg
gtgatcgccggcgaggcggccggctccaagctggcgaaggctcaggagctgggtatcgcc
gtgatcgacgaagcggagatgatccgcttgctgggtgagtga
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integrated database retrieval system
