Serratia sp. FS14: L085_02185
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Entry
L085_02185 CDS
T03313
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
serf
Serratia sp. FS14
Pathway
serf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L085_02185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serf03019
]
L085_02185
03016 Transfer RNA biogenesis [BR:
serf03016
]
L085_02185
Enzymes [BR:
serf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L085_02185
Messenger RNA biogenesis [BR:
serf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L085_02185
Transfer RNA biogenesis [BR:
serf03016
]
Prokaryotic type
tRNA degradation factors
L085_02185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AIA45899
LinkDB
All DBs
Position
complement(474109..476583)
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AA seq
824 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHLAKRETPASREELGNELGLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQALGADRKGRREARIVRVLVPKTSQIVGRFFMDAGTGFVVPDDSRLSFDILIPA
DSVSGARMGFMVVVELTQRPTRRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLSEQVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSTAKFYEAVMSSHARLTYNKVWHILQGDQELREHYHPLVKHLEELHAMYKVLDKA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANVAAARFVEKRNEP
ALYRVHDRPSDDHISALRSVLSELGLTLGGGNKPQPKDYAVLMDEVSERPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLALHRAIKYQLAKEHGEPKERWTPT
GGWHSEFEEMLQLGEHCSMTERRADEATRNVADWLKCDFMQDHVGEVFSGIISSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESSGTVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKARGEGKTERDRAKKGGQRTLRDNGSAGRGKRRGGKPPANFEPDSAFRKQ
DDAKPADNVKKAKKKAKKASDKTRKIAAATKAKRAAKKKGAEQA
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcccctatccccagc
cgtgaatatatcctggcccatttggcgaaaagagaaacgccggccagccgcgaagaactg
ggcaacgaattgggtctcagcggtgaagaacagctggaagcgctgcgccgccgcctgcgc
gccatggagcgcgatggacagttagtgtttacccgccgccagtgctacgcgctgccggaa
cgtttggatctgctgcgcggcacggtgatcggccaccgtgacggctacggcttcctgcgc
gttgaaggcagcaaagacgacctgtacctgtccgccgaacagatgaaaatggcgatccac
ggtgacgtggtgctggcgcaggcgctgggcgcggatcgcaaagggcgccgcgaagcgcgc
atcgtgcgcgtgctggtgccgaaaaccagccagatcgtcggccgcttcttcatggatgcc
ggtaccggcttcgtggtgccggacgacagccgtctgagcttcgatattctgatcccggcg
gacagcgtcagcggcgcgcgcatgggctttatggtggtggtggagctgactcagcgtccg
acccgccgcaccaaggcggttggcaagatcgttgagatcctcggcgacaagatgggcacc
agcatggcggtggacatcgcgctgcgcacccatgagatcccgcatacctggccgccgcag
gtggaaaaacaggtggccgatctcagcgaacaggtgccggaagcggccaagaagggccgc
gtcgatctgcgcaagctgccgttggtcaccatcgatggtgaagacgcgcgcgacttcgat
gacgccgtgtactgcgagaaaaaacgcggcggcggttggcgcctgtgggtggcgatcgcc
gacgtcagctactacgtgcgtccgcgcaccgcgctggacgatgaagcgcgcagccgcggc
aactcggtgtatttcccgtcgcaggtgatcccgatgctgccggaagtgctgtccaacggg
ctgtgctccctgaacccgcaggtcgatcgcctgtgcatggtgtgcgagatgaccatctcc
gcccaggggcgcctgtccacggccaagttctacgaggcggtaatgagctctcacgcccgc
ctgacctacaacaaggtgtggcacattctgcagggcgatcaggagctgcgcgagcattac
catccgctggtcaagcacctggaagagctgcacgccatgtacaaggtgctggataaggcg
cgcgccgagcgcggcggcatcgcgttcgaaaccgaagaagccaaattcatcttcaacgcc
gagcgtcgcatcgagcgcgtagagccgacggtgcgcaacgacgcccacaagctgatcgaa
gagtgcatgatcatggccaacgtggcggccgcgcgcttcgtcgagaaacgcaacgagccg
gcgctgtaccgcgtgcacgatcgtccaagcgacgatcacatctccgcactgcgcagcgtg
ctgagcgaactggggctgacgctgggcggcggcaataagccgcagccgaaggactatgcg
gtgctgatggatgaagtgtccgagcgccctgaccacgaaatgctgcaaaccatgttgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgcggccacttcggcctggcgctg
gcgtcttacggccacttcacctcgccgatccgccgttatccggatctggcgctgcaccgc
gcgatcaaatatcagctggccaaagaacacggcgagccgaaagagcgctggacgccgacc
ggcggctggcacagcgaatttgaagagatgctgcagctgggcgaacactgctcgatgacc
gagcgtcgcgcggacgaagcgacgcgcaacgtcgccgactggctgaagtgcgacttcatg
caggatcacgtcggtgaagtgttcagcggcatcatctccagcgtgaccggcttcggcttc
ttcgtgcgcctgaacgatctgtttatcgacgggctggtgcacgtatcaacgctggataat
gattactatcgctacgataatatcggccagcgcctgatcggcgagtcttccggcacggtc
tatcgcctgggggatacggtggagatccgcgtggacgcggtgcatatggacgagcgcaag
atcgacttcgcgctggtgtccagcacccgcaaagcgcgcggtgaaggcaaaaccgagcgc
gatcgcgccaagaaaggcggccagcgtacgctgcgcgacaacggtagcgcagggcgcggc
aaacgccgcggcggcaaaccgccggccaacttcgagccggacagcgccttccgcaagcag
gatgacgccaagcctgcggacaacgtgaagaaggcgaaaaagaaagccaagaaagcgtcc
gacaaaacgcggaaaatcgcggcggcgaccaaagccaaacgcgcagccaagaagaaaggt
gccgagcaggcctaa
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