Serratia sp. FS14: L085_04135
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Entry
L085_04135 CDS
T03313
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
serf
Serratia sp. FS14
Pathway
serf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
serf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L085_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serf03400
]
L085_04135
Enzymes [BR:
serf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
L085_04135
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
L085_04135
DNA repair and recombination proteins [BR:
serf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L085_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AIA46281
LinkDB
All DBs
Position
complement(901324..902139)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETSRRGIEPYLVGHSIQYAVVRNARLRWPVSEQILTLSDRPVLSVQRRAKYLL
IELENGWIIVHLGMSGSLRMLREENEDEAGKHDHVDLVISNGMILRYTDPRRFGAWLWCE
DLATSSVLAHLGPEPLSEAFNGDYLYEKSRNKRTLIKPWLMDNKLVVGVGNIYASESLFS
AGILPDRPAGSLSKAEAELLTKTIKAVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYG
RAGEPCRACGTPIESAKHGQRSTFFCRRCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagttgagacgagcagacgcggtatagagccttatcttgtcggc
cacagcattcagtatgcggtggtgcgcaatgcgcgcctgcgctggccggtttccgagcag
atcctgacgctgagcgatcggccggtgctcagcgtgcagcgccgggccaaatacctgctg
atcgagctggagaacggttggattatcgtgcacctgggcatgtcgggcagcctgcgcatg
ctgcgcgaggaaaacgaagacgaagccggcaaacacgaccacgtcgatctggtgatcagc
aacggcatgatcctgcgctataccgatccgcgccgtttcggcgcctggctgtggtgcgaa
gacctggcgaccagcagcgtgttggcgcatctggggccggaaccgctgagcgaagcgttc
aacggcgactacctgtatgaaaaatcacgcaataagcgcacgctgatcaaaccgtggctg
atggataacaagttggtggtcggcgttggtaacatttacgccagcgaatcgctgttcagc
gccgggatcctgcccgatcgtccggcgggatcgttgagcaaagccgaagcggaactgctg
acgaagaccatcaaggcggtgttgcagcgctctatcgagcagggcggcacgacattgcgc
gactttttgcagtcggacggcaaaccggggtatttcgcgcaggagctgcaggtttacggc
cgggcgggagaaccgtgccgcgcatgcggcacgccgattgaatccgccaagcacgggcag
cgcagcaccttcttttgccgccgctgccagcgctga
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