Serratia sp. FS14: L085_06920
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Entry
L085_06920 CDS
T03313
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
serf
Serratia sp. FS14
Pathway
serf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
serf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L085_06920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serf03021
]
L085_06920
Transcription machinery [BR:
serf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L085_06920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AIA46835
LinkDB
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Position
complement(1526295..1528136)
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THIGSELSSEEQDDDEEDEDDEDDDTEDDNSIDPELARQKFAELRDQYEATRLVIKKNGR
SHASAADEILKLSEVFKQFRLVPKQFDFLVNSMRTMMDRVRTQERIIMKLCVEQCKMPKK
NFVTLFAGNETSDSWFEAALAMAKPWSEKLKDVAEDVQRSLQKLRQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gacgccgatgacctgctgctcgccgaaaactcgaacagcacggacgaagatgcggaagaa
gccgccgcacaggttctgtccagcgtggaatccgaaatcggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtcgaactgctgacgcgcgaaggcgaaatcgac
atcgccaagcgcatcgaagacggcatcaaccaggtacagtgctcggttgccgaatacccg
gaagccatcacttacctgcttgagcagtacgatcgcgtcgaagcgggtgaagcgcgcctg
tccgatctgatcaccggcttcgtcgatcctaacgcggaagaggacatcgccccaaccgcc
actcatatcggttctgaactgtcgagcgaagagcaagacgacgacgaagaagatgaagac
gacgaagacgacgacaccgaagacgacaacagcatcgatcctgagctggcgcgtcagaag
ttcgccgagttgcgcgatcagtatgaagcgacccgcctggtgatcaagaaaaacggccgc
agccacgccagcgccgcggacgagatcctgaagctgtctgaagtgttcaagcagttccgc
ctggtgccgaaacagttcgacttcctggtcaacagcatgcgcaccatgatggaccgcgtt
cgcacccaggaacgcatcatcatgaagctgtgcgttgaacagtgcaaaatgccgaagaaa
aacttcgtcaccctgttcgccggcaacgaaaccagcgattcctggttcgaagcggcgctg
gcgatggccaagccatggtcggaaaagctgaaagacgttgctgaagacgtgcagcgcagc
ctgcagaaactgcgtcagatcgaagaagaaaccggcctgaccatcgagcaggtcaaagac
atcaaccgtcgcatgtcgatcggtgaagcgaaagctcgccgcgcgaagaaagagatggtt
gaggccaacctgcgtctggttatttctatcgccaagaaatacaccaaccgcggcctgcag
ttcctggatctgatccaggaaggcaacatcggcctgatgaaagcggtagacaagttcgaa
taccgccgcggctacaagttctcgacgtacgccacctggtggatccgtcaggctatcacc
cgctccatcgccgaccaggcgcgcaccatccgtattccggtgcatatgattgagaccatc
aacaagctcaaccgtatttcgcgccagatgctgcaagagatgggccgcgagccgacgccg
gaagagctggccgagcgcatgctgatgccggaagacaagatccgcaaagtgctgaagatc
gccaaagagccaatctcgatggaaacgccgatcggcgacgacgaagattcgcatctgggc
gacttcatcgaggataccaccctcgagctgccgctggactccgcgacctcggaaagcctg
cgttccgccacccacgacgtgctggccggcctgaccgcgcgcgaagcgaaagtgctgcgc
atgcgtttcggcatcgacatgaacaccgaccacacgctggaagaggttggcaagcagttt
gacgttacccgtgagcgtattcgtcagatcgaagccaaggcgctgcgcaagctgcgtcac
ccaagccgctccgaagtgctgcgcagcttcctggacgattaa
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