Serratia sp. FS14: L085_15560
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Entry
L085_15560 CDS
T03313
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
serf
Serratia sp. FS14
Brite
KEGG Orthology (KO) [BR:
serf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
serf03016
]
L085_15560
Enzymes [BR:
serf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L085_15560
Transfer RNA biogenesis [BR:
serf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L085_15560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AIA48533
LinkDB
All DBs
Position
complement(3409155..3411089)
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AA seq
644 aa
AA seq
DB search
MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKEAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTQFITDGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPDAALTREDLTALEFVTIDSASTEDMDDALYVTDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGDDIQF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDAIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLEGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQSAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtcgtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagctacttcattccaccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgatcgtctgtccatcgtg
cccgatcatccgttgctgaaagaggcgattccgtgccgcccggtgcgtgaactgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgccgccacccgctgaaaggcgat
cgcggcttcaacgccgatctgacccagtttatcaccgacggtgaagaccatttcgccccg
tggtgggtgacgctggcacgccacaatctggaaaaagaagcgccggagatgcaggccctc
agcgagccggacgccgcgctgacgcgtgaagacctgaccgcgcttgaattcgtcaccatc
gacagcgccagcaccgaagacatggacgatgcgctgtatgtgaccgacaacggtgacggt
tcgctgcagttgaccatcgccatcgccgatccgaccgcctacgtcgagcaaggcagcaag
ctggacgatatcgcccgcgtgcgcgccttcaccaactacctgccgggcttcaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgttcgctgcgccctaacgagcgccgccag
gtgctggcctgccgcgtaaccatcgccgccgacggcgcgctgggcgacgatattcagttc
ttcgccgccgagatcgaatccaaagccaaactggtgtacgacgaagtttccgactggctg
gaaggcattgccggctggcagccgccgagcgacgccatcgcacaacagatcaccctgctg
aaacgcgtttgcgacgcgcgtaacgcctggcgccaccagcatgcgctggtattcaaagat
cgcccggactaccgcttcgtgttgggtgaaaaaggcgacgtgctggagatcgtcaccgag
cagcgccgcagtgccaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgcgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cccgcgttggttgagcaagcggtcaccgtactgcaggctaacggcgtggaagccgaagcc
gaaaaactgctgacccttgagggcttctgcgaactgcgccgccatctggatgcgcagccg
actcagttccttgacagccgcatccgtcgcttccaaaccttcgcggagatcagcaccacg
ccggggccgcacttcggtctggggttggaggcttacgccacctggacatcgccgatccgt
aaatacggcgacatggtcaaccatcgcctgctgaaggcaatcatcaaccagcaatcggcc
gaaaaaccgcaggatgacgtaacggtgcagctggcggaacgccgccgcctgaaccgcatg
gcggaacgcgacgttggcgactggctgtacgcccgcttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagattatcgacgtgacacgcggcggcctgcgtgtgcgcctg
ctggacaacggcgcggttgccttcatcccggcaccgtttattcacgcggtgcgtgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaaaggtgaagtggtttaccgccag
agcgacaccttgcaggtcaccatcgctgaagtgcgcatggaaacccgcagcgtgatcgcc
cgccctgtggcctga
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