Spiroplasma eriocheiris: SERIO_v1c11150
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Entry
SERIO_v1c11150 CDS
T03974
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seri
Spiroplasma eriocheiris
Pathway
seri03030
DNA replication
seri03410
Base excision repair
seri03420
Nucleotide excision repair
seri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SERIO_v1c11150 (ligA)
03410 Base excision repair
SERIO_v1c11150 (ligA)
03420 Nucleotide excision repair
SERIO_v1c11150 (ligA)
03430 Mismatch repair
SERIO_v1c11150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seri03032
]
SERIO_v1c11150 (ligA)
03400 DNA repair and recombination proteins [BR:
seri03400
]
SERIO_v1c11150 (ligA)
Enzymes [BR:
seri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SERIO_v1c11150 (ligA)
DNA replication proteins [BR:
seri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SERIO_v1c11150 (ligA)
DNA repair and recombination proteins [BR:
seri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SERIO_v1c11150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SERIO_v1c11150 (ligA)
MMR (mismatch excision repair)
DNA ligase
SERIO_v1c11150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SERIO_v1c11150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
NinE
Motif
Other DBs
NCBI-ProteinID:
AKM54668
UniProt:
A0A0H3XIF6
LinkDB
All DBs
Position
complement(1217987..1219984)
Genome browser
AA seq
665 aa
AA seq
DB search
MNFNEAQKRVEFLKEQINKWNYEYYVLDNPSVSDQEYDRAMQELMALETEHRELITFDSP
TQRVSGEVSDKFNKYEHQSPMLSLANAFNLEDLHHFDDQIKELTGLSEIEYTCELKIDGL
SISLIYENHLLKIGATRGDGTTGEDVTVNIKKIRSVPLKIDQENLTVRGEVYLSKNDFEK
INKEREANEEPLFANPRNAAAGTLRQLDSSIIAKRNLSAFLYYYVNATNDGIKTQSEALQ
RLAALKFKINKEFRVCKNIDEVWDYVQTYQAKREDLEYEIDGIVIKVNDLSLYNRIGYTA
KNPKWAIAYKFPAEIVITKILNIFPSVGRTGRITYNAQLEPVRIAGTIVKAATLHNASFI
IDKDIRIGDDVKVKKAGDIIPEVISYLPEKRSKNAKKWQEATHCPVCHSLLERTAGEVDQ
YCINSLCSKKITRSLEHFCSRNAMNIEGISEKIIEKLFNLNYLKSFSNLYELEKYHQEIV
ELENFGEKSYQNMINSINNSKTNSLEKLLFGLGIRHVGQKTAKLIARKFLTMEMIASATF
EELATINDVGPIVATSVVDYFKIAENINEVKKLAQLGINMTYQPSTNNNSNKFENYRFVI
TGTLSKPREYFKDLIESMGGATSDSVSSKTTFVLAGTDPGSKITKAAKLNVKIISEEDFN
KLLNS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatgaagcacaaaaacgagtggaatttttaaaagaacaaatcaacaaatga
aattatgaatattatgttttagataatccaagtgttagtgaccaggaatacgaccgggct
atgcaagaattaatggcgttagaaactgaacatcgtgaattaattacttttgattcaccg
acccaacgagtatcaggagaagtaagcgataaatttaataaatatgagcaccaaagccca
atgctaagtttggctaatgcttttaacttggaggatctccaccattttgatgaccaaatt
aaggaactaacaggattaagtgaaattgaatacacttgtgagttaaagattgatgggtta
tcaatatcattaatttatgaaaatcatttattaaaaattggagcgacccgcggggatggt
acaacgggagaagatgtaactgttaatattaaaaagattagatcagttccgttaaaaatt
gaccaggaaaatttaactgtccgtggcgaagtttatttatcaaaaaatgattttgaaaaa
attaataaagaacgcgaagcaaatgaagagccattatttgctaatcctcgcaatgctgct
gccggaacattacgtcagttagattcaagtattattgcaaaacgaaatttaagtgctttt
ttatattactatgttaatgctactaatgatgggattaaaacccaaagtgaagctttacaa
cgcttagctgctttaaagtttaaaattaataaggagtttcgtgtttgtaaaaatattgat
gaagtatgagactatgttcaaacataccaggcaaaacgtgaagatttagaatatgaaatt
gatggaattgttattaaagtcaatgatttaagtttatataaccgaattgggtatacagct
aaaaaccctaaatgagcaattgcctataaattcccagccgaaattgtcattaccaaaatt
ctaaatatctttccatctgttggaagaactgggcggatcacttataatgcgcagttagaa
cctgtgcggattgccggaaccattgttaaagctgcaacattacataatgcttcttttatt
attgataaagatattcgtattggtgatgatgtcaaagttaaaaaagcgggtgatattatt
ccagaagtaatcagttatttaccagaaaaaagaagtaaaaatgctaaaaagtgacaagaa
gccacccattgcccggtatgtcattcattattagaacggacagcaggagaagttgatcag
tactgtattaattctttatgtagtaaaaaaatcaccagatcattagaacatttttgctca
cgcaatgcgatgaatattgagggaattagtgaaaaaattattgaaaaattatttaattta
aattatttaaaaagttttagtaacttgtatgaattagaaaaataccaccaagaaatagtg
gagttagagaactttggtgaaaaatcatatcaaaatatgattaattcaattaataattca
aaaactaattccttggagaaattattatttgggttagggattcgtcatgtggggcaaaaa
accgccaaattaattgcgcgaaaatttttaacaatggaaatgattgcatcagctactttt
gaagagttggcaactattaatgatgttggtccgattgtggcaactagtgttgttgattat
ttcaaaattgcagaaaatattaacgaagtaaaaaaactagcgcagttaggaattaatatg
acatatcaaccaagtactaataataattctaataaatttgaaaattatcgttttgtaatt
actggtactttatcaaaaccccgtgaatatttcaaagatttgattgaaagtatgggaggg
gcaacttcagatagtgtaagtagtaaaacaacttttgtgttagcaggaactgatccagga
agtaaaattaccaaagcagcgaaattaaatgttaaaataataagtgaagaggattttaat
aaattattaaattcatag
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