Serratia sp. SCBI: SERRSCBI_17275
Help
Entry
SERRSCBI_17275 CDS
T03314
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03030
DNA replication
sers03410
Base excision repair
sers03420
Nucleotide excision repair
sers03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SERRSCBI_17275 (ligA)
03410 Base excision repair
SERRSCBI_17275 (ligA)
03420 Nucleotide excision repair
SERRSCBI_17275 (ligA)
03430 Mismatch repair
SERRSCBI_17275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sers03032
]
SERRSCBI_17275 (ligA)
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_17275 (ligA)
Enzymes [BR:
sers01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SERRSCBI_17275 (ligA)
DNA replication proteins [BR:
sers03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SERRSCBI_17275 (ligA)
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SERRSCBI_17275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SERRSCBI_17275 (ligA)
MMR (mismatch excision repair)
DNA ligase
SERRSCBI_17275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SERRSCBI_17275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AIM23031
LinkDB
All DBs
Position
complement(3678195..3680216)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAYPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSDRAQRRTGSEEVLAFYRQVERDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVAAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgagccacattgcgccatcatgaatac
cagtatcatgtgctggatgcgcccgaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctcgagagcgcgtatccggagctgatcaccgccgattcgccgacccag
cgcgtgggcgcggcgccgctggcggcgtttgaccaggtgcgtcacgaagtgccgatgctg
tcgctggacaacgtgttcgacgaagagagcttcctggcgttttacaagcgcgtgcaggac
aggctcaagagcagcgatccgctgaccttctgctgcgagctgaagctggacggcctggcg
gtcagcctgctgtacgaagacggtgagctggtgcgtgcggcgacgcgcggcgacggcacc
accggcgagaacatcacctccaacgtgcgcaccattcgcgccatcccgctgcgcctgacc
ggcgacaacatcccgcgccggctggaagtgcgcggcgaagtgttcatgccgcaggcaggg
tttgaacagatgaacgaagaggcgcggcgcaaagacggcaaggtgttcgccaatccgcgc
aacgccgccgccggttcgctgcgccagctcgatccgcgcattaccgccaaacgcccgctg
accttcttttgctatggcgtcgggctgctggaaggcggcgagctgccgcgcagccacttc
gaacgcctgatgcagttcaaggcctggggcctgccggtcagcgatcgcgcccagcgccgc
accggcagcgaggaagtgctggcgttctatcgccaggtcgagcgggaccgcgcacagctc
ggtttcgatatcgacggcgtggtgatcaagattgacgacatcgatctgcaggaaacgctg
ggcttcgtggcgcgtgcgccgcgctgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtggtgcgcgaagtggagtttcaggttggccgcaccggcgcgattacgccggtg
gcgcgccttgagccggtgctggtggccggggtgaccgtcagcaacgccaccttgcacaac
gccgatgaaattgagcggttggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggcgtgctggaagaccgtcggccgcaggatgcgcgc
gaagtggtgttcccgctgcactgcccggtgtgcggttccgacgttgagcgcgtggaaggc
gaggccgtggcgcgttgcaccggcggtcttatctgcggcgcgcagcgcaaagaggcgttg
aagcatttcgtttcccgccgcgcgctggacgttgaaggcatgggcgacaagatcatcgag
cagctggtggacaaggagtacgtgaagaacccggccgatctgttccggctgtccgccggc
attctgaccggcctggatcgcatggggccgaaatcggcgcagaatctggttaatgcgctg
gagaaatccaagcagaccaccttcgctcgcttcctgtatgcgctcggcattcgcgaggtc
ggcgaagcgaccgccgccaacctcgcggcgcatttcggatcgctcgagaagctgttcgcc
gccgacatcgaggcgctgaaagaggtgccggacgtcggcgaagtggtggccaaacacacg
cgcaacttcctcgatgaagcgctcaatcagcaggtgatcaacgagttggtgggcgccgag
atcggcatccactggccggcgccggtggtggtggcggcggaagagatagacagcccgttc
gccggcaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgacgaggccaaa
gatcgcctgacggcgctgggcgccaaggtcagcggcagcgtgtcgaagaaaaccgatctg
gtgatcgccggcgaggcggccggctccaagctggcgaaggctcaggagctgggtatcgcc
gtgatcgacgaagcggagatgatccgcttgctgggtgagtga
DBGET
integrated database retrieval system
