Ornithinimicrobium pratense: FY030_03205
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Entry
FY030_03205 CDS
T06221
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
serw
Ornithinimicrobium pratense
Pathway
serw03030
DNA replication
serw03410
Base excision repair
serw03420
Nucleotide excision repair
serw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
serw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FY030_03205 (ligA)
03410 Base excision repair
FY030_03205 (ligA)
03420 Nucleotide excision repair
FY030_03205 (ligA)
03430 Mismatch repair
FY030_03205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
serw03032
]
FY030_03205 (ligA)
03400 DNA repair and recombination proteins [BR:
serw03400
]
FY030_03205 (ligA)
Enzymes [BR:
serw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FY030_03205 (ligA)
DNA replication proteins [BR:
serw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FY030_03205 (ligA)
DNA repair and recombination proteins [BR:
serw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FY030_03205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FY030_03205 (ligA)
MMR (mismatch excision repair)
DNA ligase
FY030_03205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FY030_03205 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
DUF742
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QFG67864
UniProt:
A0A5J6V3H4
LinkDB
All DBs
Position
700041..702260
Genome browser
AA seq
739 aa
AA seq
DB search
MVSVSEQSPTETEAPPRPDGEEIPEPARHRWVELVEEIRQHQFAYYVKDAPTVSDAEFDA
LLRELQALEEEHPGLRAPDSPTQVVGGTFSTEFTAVDHLERMLSLDNAFSLEELDAWAER
VERDAGGAEVHYLCELKIDGLAVNLLYEDGRLVRALTRGDGRTGEDVTLNVRTIEGVPLQ
LRAPEQQKAEGVAEEAAVVEGGAEEVEPVPVPGLVEVRGEVYLPVSVFEEINAALVEAGK
APYANPRNTAAGSLRQKDPRITAQRGLRMLVHGIGAREGFEITRQSQAYELLAAWGLPVS
GRATVLSSLAEVRDYATYYGEHRHDVEHELDGVVVKVDEVAVQRRLGSTSRAPRWAIAYK
YPPEEVTTKLLDIRVDVGRTGRVTPWGLMEPVLVAGSTVERATLHNQHEVERKGVLIGDT
VVLRKAGDVIPEILGPVVDLRDGSEQAFVMPTYCPSCGTELAPAKEGDKDIRCPNARSCP
AQLRERLYSLASRGAFDIEALGGEGVNALLEAGVLTNEATLFSLTAEDVRRVPLYTRTAK
RTDPEGAVVDGRVLSANGQKLVDNLEQAKRQPLWRVLVALSIRHVGPTAARALATEFASM
DAIRSASVEQLAATEGVGGVIAESVKEWFAVDWHTEIVDRWAADGVRMADERDESVGRTL
EGLTVVVTGSLEGFSRDESKEAIITRGGKAAGSVSKKTDYVVVGANAGSKADKAEELGVP
ILDEAQFVRLLATGQPDEV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcgtgagcgagcagagccccacggagaccgaggcacccccccgccctgacggt
gaggagatcccggagccggcacggcaccgatgggtcgagctggtcgaggagatccgccag
caccagttcgcctactacgtcaaggacgcgccgacggtcagcgacgcagagttcgatgcc
ctgctgcgcgagctgcaggcgctggaggaggagcacccggggctgcgggcgccggacagc
ccgacgcaggtggtggggggaaccttctccaccgagttcacggcggtcgaccacctggag
cggatgctcagcctcgacaacgccttcagtctggaggagctggacgcctgggccgagcgg
gtcgagcgggacgccgggggcgccgaggtgcactacctgtgtgagctgaagatcgacggt
cttgctgtcaacctgctgtatgaggacgggcggctggtccgggctctcactcggggtgac
gggcggacgggggaggacgtcacgctcaacgtgcgcaccatcgagggcgtgcccctccag
ctgcgggcgccggagcagcagaaagctgagggggtggccgaggaggccgccgtggtcgag
ggcggggcagaggaggtggagccggtgccggtgccagggctggtcgaggtgcgcggcgag
gtctacctgccggtgagcgtcttcgaggagatcaacgccgcgctggtcgaggcgggcaag
gccccttacgccaacccgcgcaacaccgccgccggctcgctgcggcagaaggatccccgc
atcaccgcccagcgcggcctgcggatgctcgtgcacggcatcggcgcccgggagggcttt
gagatcacccgccagtcgcaggcctacgagctgctggccgcctggggactcccggtctcc
ggccgggccacggtgctctcgtccctggcggaggtccgggactacgccacctactacggc
gagcaccggcacgacgtggagcacgagctggacggggtcgtggtcaaggtggatgaggtc
gccgtccaacgccggctcggctccacctcccgcgccccacgctgggcgatcgcctacaag
tacccgcccgaggaggtcaccaccaaactgctggacatccgggtcgacgtcggccgcacc
ggccgggtcacgccctggggcctgatggagccggtgctggtggccggctcgaccgtggag
cgggccaccttgcacaaccagcacgaggtcgagcgcaagggcgtcctcatcggcgacacc
gtggtgctgcgcaaggccggtgacgtcatccccgagatcctcggcccggtggtggacctg
cgcgacggctccgagcaagccttcgtcatgcccacctactgcccctcgtgcggcaccgag
ctggcacctgcgaaggagggggacaaggacatccgctgccccaacgcccggtcctgcccg
gcgcagctgcgcgagcggctctactccctggcctcccgcggcgccttcgacattgaggcg
ttgggcggggagggggtcaacgcactcctggaggccggcgtgctgaccaacgaggccacc
cttttctcgctcaccgccgaggatgtgcggcgcgtgcccctctacacccggacggccaag
cggaccgatcccgagggcgccgtcgtggacggccgcgtgctttccgccaacggccagaag
ctggtcgacaacctggagcaggctaagcgtcagccgctgtggcgggtgctggtggcgctg
tcgatccggcacgtcggcccgaccgcggcgcgcgctctggccaccgagttcgcctcgatg
gacgccatccgctcagcgtcggtggagcagctggcggccaccgagggcgtgggcggggtg
atcgccgagtcggtcaaggagtggttcgcggtcgactggcacaccgagatcgtggaccga
tgggctgccgacggtgtccgcatggccgacgagcgcgacgagtccgtggggcggaccctg
gagggcctgaccgtcgtggtcaccgggtccctggagggcttctctcgcgacgagtccaag
gaggcgatcatcacccgcggcggcaaggctgccggatcggtgagcaagaagaccgactac
gtcgtcgtgggcgccaacgccgggtccaaggccgacaaggccgaggagctgggcgtgccg
atcctggacgaggcgcagttcgtccggctgctggcgaccggtcagcccgacgaggtctga
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