Salmonella enterica subsp. enterica serovar Enteritidis P125109: SEN3561
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Entry
SEN3561 CDS
T00776
Symbol
yicF
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
set
Salmonella enterica subsp. enterica serovar Enteritidis P125109
Pathway
set03030
DNA replication
set03410
Base excision repair
set03420
Nucleotide excision repair
set03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
set00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SEN3561 (yicF)
03410 Base excision repair
SEN3561 (yicF)
03420 Nucleotide excision repair
SEN3561 (yicF)
03430 Mismatch repair
SEN3561 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
set03032
]
SEN3561 (yicF)
03400 DNA repair and recombination proteins [BR:
set03400
]
SEN3561 (yicF)
Enzymes [BR:
set01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SEN3561 (yicF)
DNA replication proteins [BR:
set03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SEN3561 (yicF)
DNA repair and recombination proteins [BR:
set03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SEN3561 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SEN3561 (yicF)
MMR (mismatch excision repair)
DNA ligase
SEN3561 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SEN3561 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CAR35140
UniProt:
B5R5H2
A0A723VL17
LinkDB
All DBs
Position
complement(3812260..3813945)
Genome browser
AA seq
561 aa
AA seq
DB search
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQHWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIDSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASETCQEQFISRLVW
LGSRSALGLDGMGEASWRALHQTHRFKHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNL
ARRQSFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRN
NPQIKTLSRWLAAQHIPGFGS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcacccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggtgttagcgcggttgacgatagtgtg
tacgaccagctcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcaccctgttgcgcacacgggc
gtacgtaaactcgcggaccgacaggcggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacagccaaaagtggatggtgtagcggtaacgctggtttatcaaaacggtaaactg
accagggctatcagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagacaacacaaggcgcgcttgctaacgcggtgttgcagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaataaatataccctggcggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcattaccctttgtaacggatggcgta
gtgatacgcatggctaaagaacctgcgtcacaacactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcgattctgtgaagcgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggcggggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgagcggagtaagcctgtaccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggaaacgtgtcaggaacagtttatctccaggctggtatgg
ctggggtcacggtcggcgttgggtctggacggaatgggcgaagccagctggcgggccttg
catcagacgcatcgctttaagcatatcttctcctggcttgccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagtcgtttacccgctggatcatggcgatggatatccccttaacgcaggct
gcattacaggccagcggcgatcgttcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttaccagcgacgggcgagcgtcgtgccgggagagtcatcgactggcggaat
aatccgcagatcaaaacgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag
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integrated database retrieval system
