KEGG   Suncus etruscus (white-toothed pygmy shrew): 125995697
Entry
125995697         CDS       T09902                                 
Name
(RefSeq) DLA class II histocompatibility antigen, DR-1 beta chain-like isoform X1
  KO
K06752  MHC class II antigen
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04145  Phagosome
setr04514  Cell adhesion molecules
setr04612  Antigen processing and presentation
setr04640  Hematopoietic cell lineage
setr04658  Th1 and Th2 cell differentiation
setr04659  Th17 cell differentiation
setr04672  Intestinal immune network for IgA production
setr04940  Type I diabetes mellitus
setr05140  Leishmaniasis
setr05145  Toxoplasmosis
setr05150  Staphylococcus aureus infection
setr05152  Tuberculosis
setr05164  Influenza A
setr05166  Human T-cell leukemia virus 1 infection
setr05168  Herpes simplex virus 1 infection
setr05169  Epstein-Barr virus infection
setr05310  Asthma
setr05320  Autoimmune thyroid disease
setr05321  Inflammatory bowel disease
setr05322  Systemic lupus erythematosus
setr05323  Rheumatoid arthritis
setr05330  Allograft rejection
setr05332  Graft-versus-host disease
setr05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:setr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    125995697
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    125995697
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    125995697
   04612 Antigen processing and presentation
    125995697
   04658 Th1 and Th2 cell differentiation
    125995697
   04659 Th17 cell differentiation
    125995697
   04672 Intestinal immune network for IgA production
    125995697
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    125995697
   05164 Influenza A
    125995697
   05168 Herpes simplex virus 1 infection
    125995697
   05169 Epstein-Barr virus infection
    125995697
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    125995697
   05152 Tuberculosis
    125995697
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    125995697
   05140 Leishmaniasis
    125995697
  09163 Immune disease
   05310 Asthma
    125995697
   05322 Systemic lupus erythematosus
    125995697
   05323 Rheumatoid arthritis
    125995697
   05320 Autoimmune thyroid disease
    125995697
   05321 Inflammatory bowel disease
    125995697
   05330 Allograft rejection
    125995697
   05332 Graft-versus-host disease
    125995697
  09166 Cardiovascular disease
   05416 Viral myocarditis
    125995697
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    125995697
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:setr04147]
    125995697
Exosome [BR:setr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   125995697
  Exosomal proteins of epithelial cells
   125995697
  Exosomal proteins of breast milk
   125995697
SSDB
Motif
Pfam: MHC_II_beta C1-set ig Ig_2 Ig_3
Other DBs
NCBI-GeneID: 125995697
NCBI-ProteinID: XP_049620667
LinkDB
Position
18:complement(36879007..36891501)
AA seq 259 aa
MTTLAVILMLLSPSLALARDTSPHFLEMAKSECHFSNGTERVRFLQRYFYNGAELARFDS
DVGEFRAVTELGRPEAESWNSQKDILEDNRAAVDTYCRHNYGVLDSFIVHRRVQPMVTKV
FPTKTQPLHHHYLLVCSVNGFYPGNIEVRWFRNGQEQEAGVISTGLIWNGDWTFQIMVML
ETVPESGDVYRCQVEHPSLSSPMSEEWRAQSDSAQSKMLSGIGGFVLGLVFLGVGLFINY
RNQKGNSGLQPTGNILLVS
NT seq 780 nt   +upstreamnt  +downstreamnt
atgacaactctggcagtgatactgatgttgctgagtccttcccttgctttggccagggac
acctcaccgcatttcttggaaatggcgaagtctgagtgtcacttctccaacgggacggag
cgggtgcggttcctgcagagatacttctataacggagccgagctcgcgcgcttcgacagc
gacgtgggcgagttccgggcggtgaccgagctggggcggccggaagccgagtcctggaac
tcacagaaggacatcctggaggataacagggccgcggtggacacgtactgcagacacaac
tatggggtcttagatagcttcatcgtgcacaggagagttcagcccatggtgactaaagtg
tttcctacgaagactcagcctctgcaccaccactacctcctggtctgctctgtgaatggt
ttctacccaggtaacattgaagtcaggtggttccggaatggccaggagcaggaggccgga
gttatctccacaggactcatctggaatggagactggaccttccagataatggtgatgctt
gaaacagttcctgagagtggagatgtctacaggtgccaagtggagcacccaagcctgtca
agtcccatgtcagaggaatggagggcacagagtgactctgcacagagcaaaatgctgagt
ggaattgggggctttgttttgggcctagtcttccttggagtaggcttgtttatcaactac
agaaatcagaaaggaaactcgggacttcagcccacaggtaacattttactcgtgtcttag

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