Suncus etruscus (white-toothed pygmy shrew): 125999497
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Entry
125999497 CDS
T09902
Symbol
TRPC5
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04360
Axon guidance
setr04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
125999497 (TRPC5)
09158 Development and regeneration
04360 Axon guidance
125999497 (TRPC5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
setr01009
]
125999497 (TRPC5)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
125999497 (TRPC5)
Protein phosphatases and associated proteins [BR:
setr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125999497 (TRPC5)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125999497 (TRPC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
125999497
NCBI-ProteinID:
XP_049623514
LinkDB
All DBs
Position
X:126697962..126871267
Genome browser
AA seq
975 aa
AA seq
DB search
MAQLYYKKVNYSPYRDRIPLQIVRAETELSAEEKAFLNAVEKGDYATVKQALQEAEIYYN
VNINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRR
PSGERQVPTLMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVSIPRPHQIRCNCVE
CVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKTE
YEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFI
KKPFIKFICHTASYLTFLFMLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWGEIK
EMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAISNILSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETKAIDEPNHCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPP
FNIIPSPKSFVYLGNWFNNTFCPKRDPDGRRRRHNLRSFTERHADSLIQNQHYQEVIRNL
VKRYVAAMIRNSKTNEGLTEENFKELKQDISSFRYEVLDLLGNRKHPRRSFSASSTELSQ
RDDNDDSSGGARAKSKSVSFSLGCKKKANQGPPLIRTMPRTSGPPGKSKAESSSKRSFMG
PSLKKLGFFFNRFNNGQTSEPSSEPMYTISDGIIQPHYMWQDLRYPQGAKGKEEPCSQSE
LNLSAAELGEARGPAHSRESPLACASSLQCISSICSSNSKLLDSSEDVFETWGEACDLLM
HKWGDGQEEQVTTRL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaactgtactataaaaaagtaaactactcaccctacagagaccgcatccccttg
caaattgtgcgggcagagacagaactctctgcagaggaaaaggcctttctcaatgcagtg
gaaaaaggagattatgccactgtgaaacaggccctccaggaggccgaaatttactacaat
gtgaacatcaactgcatggatcctttgggccggagtgctttgctcattgcgattgaaaat
gaaaacttggagatcatggaactactgctgaaccacagtgtatatgtaggggatgccttg
ctctacgctatacgaaaagaggtcgtgggtgctgtggagcttctgctcagctacaggcgg
ccaagtggagagaggcaggtccccactttaatgatggacacccagttctctgaattcacg
ccagacatcacacccatcatgctggcggcacacaccaacaactatgaaatcatcaaattg
cttgttcaaaagcgagtcagtatccccaggccccaccagatccgctgtaactgtgtggag
tgtgtgtccagctcagaagtagacagcttgcgtcattcccgctccagattgaacatttat
aaggcgctggccagcccttcactcattgccttgtccagcgaggatcccatcctaactgct
ttccgcctcggctgggagctgaaggagctaagcaaagtggaaaatgagttcaagactgag
tatgaggagctctcccaacagtgcaaattatttgccaaagacctgctcgaccaagcacgg
agctcccgggagctagagatcatcctcaaccatagagacgaccacagtgaagaactggac
ccccaaaaataccatgacctggcgaaactgaaggtagcaatcaaataccaccagaaagag
ttcgttgctcagcctaattgccaacagttacttgccactctgtggtatgatggcttccct
ggatggcgacggaaacactgggtagtcaagcttctgacttgcatgaccattgggttcctg
tttcccatgctgtctatagcatatctgatatcacccaggagtaatcttgggctgttcatc
aagaaaccctttatcaagttcatctgccacacagcatcatatctgaccttcctcttcatg
cttctcctggcttctcaacacatcgtcaggacagacctccatgtccaggggcctcctcca
actgttgtggaatggatgatattgccctgggtccttggtttcatttggggggagattaag
gaaatgtgggatggaggatttactgaatatatccatgattggtggaacctgatggatttt
gcaatgaactcactctacctggcaactatttcattgaagattgtggcctatgtcaagtat
aacggttcgcgtcccagggaagaatgggaaatgtggcaccccaccctgatcgcagaagcg
ctctttgccatctccaacatcttaagttccctgcgtcttatatccctgttcacagccaac
tcccacttagggcctctgcagatttctttggggcgaatgctgctcgatatcctcaagttt
ctctttatctactgtctggttttgctggcttttgccaatggattgaaccagctttatttt
tattatgagaccaaagcaatcgatgaacctaaccactgcaaagggatccggtgtgagaaa
cagaacaatgccttctccacgctctttgaaacccttcagtcactattctggtctgtattt
ggtcttttaaatctctatgtcaccaatgtgaaagccagacatgagtttacagagtttgtg
ggagctaccatgtttgggacatacaatgtcatctccctggtagtactgcttaacatgctg
atcgccatgatgaacaactcctaccagcttattgccgatcatgcagatattgagtggaag
tttgcaaggaccaagctctggatgagttactttgatgaaggtggcaccttgccacctccc
ttcaacattatccccagtcccaagtcatttgtatacctcggtaactggtttaacaacacc
ttctgccccaaaagagaccctgatggaagacggagaagacacaacctgagaagtttcaca
gaacgccatgctgacagcttgatacagaatcaacattaccaggaagttatcaggaattta
gtcaaaagatatgtggctgctatgataagaaactccaaaacaaacgagggactaacagaa
gaaaattttaaggaattgaaacaggacatttccagctttcgttatgaagtactcgatctt
ctcggaaatagaaaacacccaaggagaagtttttccgccagcagcacggaactgtcccag
agggatgacaacgatgacagcagtggcggggctcgggccaaatccaagagcgtctctttc
agtctgggctgcaagaaaaaagccaaccaggggccacctctcatcagaaccatgccacga
accagcggcccgccagggaagtccaaagccgagtcatccagcaagcgctccttcatgggg
ccttcccttaagaaattggggttcttcttcaaccgctttaataacggtcagacgtccgag
cccagttcggagcccatgtacaccatttcggatggcatcatccagccacactacatgtgg
caggacctcagatatcctcagggggccaaaggcaaagaagagccgtgttcgcagagcgag
ctcaatctcagtgctgcagaattgggcgaagctcggggtccggcgcatagcagagagagc
cccctcgcctgtgccagctcgcttcagtgcatctccagcatctgctcctcaaattcgaaa
cttttagactcctcggaggatgtctttgaaacttggggagaggcctgtgacctgctcatg
cacaaatggggcgacggacaagaagaacaagtcacaactcgcctctaa
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