Suncus etruscus (white-toothed pygmy shrew): 126015555
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Entry
126015555 CDS
T09902
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126015555 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
setr03400
]
126015555 (LIG4)
Enzymes [BR:
setr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126015555 (LIG4)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126015555 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
126015555
NCBI-ProteinID:
XP_049634059
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All DBs
Position
8:complement(122001949..122863723)
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AA seq
911 aa
AA seq
DB search
MAAALASPTVASHVPFADLCSTLERIQKSKGRAEKIKHYKEFLDSWRKFHDALHKHQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDAQKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNSILDSVASNNSAKRKDLMKKSLLQFITQSSA
LEQKWLIRMIVKDLKLGISHQTIFSVFHRDAPELHNVTTDLEKVCRQLHDPSIGLSDISI
CLFSPFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDIYEYFSRNGFNYTS
QFGASPQEGSLTPFIHEAFQKDQQVCILDGEMMAYNPNTHTFMQKGNKFDIKRMVEESDL
QTCFCVFDVLMVNNKKLAHETLKKRYEILSSVFTPIPGRIELVQKTQAHTKNEVINALNE
AIDKREEGIMVKHPFSIYKPDKRGEGWLKIKPEYVTGLMDELDVLLVGGYWGKGSRGGMM
SHFLCAVAEKPPLGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKRAPPSSILC
GTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIEKIREDKEWYECMTLEDME
QLRGKASGKLASKHLYITGNDEPQEKKRKVVPKVKKAIGIMEHFKAPNLSSVNKVSNVFE
DVEFCVMSGLDSHPKPVLENKIAEFGGYIVQNPGPDTYCVVAGSENIRVKNIISSDKHDV
VKPDWLLECFENQSCVPWQPRHMIHMCPSTKQHFACEYDSYGDSYFVDTDLEQLKEVFSG
IQQSSGQTPKEMASVIADLEYRYSWDHSPLNMFRLLTVYVDLYQVISDSSTQVEGTRLAI
TALELRFRGAQVVSSLAEGVSHVIIGEDHSRVVDFKAYRRTLKRKFKILREDWVIDSINK
CELQEENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcactagcttcacccacagtcgcctctcacgtaccctttgcagatttgtgt
tcaactttggaacgaatacagaaatccaaaggacgtgcagaaaagattaaacactacaaa
gagtttttagattcttggaggaagtttcatgatgcccttcataaacatcagaaagatgtc
acagactctttttatccagcaatgagacttattcttccccagctagaaagagagagaatg
gcctatggcatcaaagaaacgatgcttgctaagctctatattgaactacttaatttaccc
aaagaaggaaaggatgcccagaaacttttaaattatagaacacctactggaactcgtgga
gatgcaggagactttgccatgattgcttactttgtgttgaaaccaagatgcttgcagaag
ggaagtttgaccatccagcaggtcaacagcattctggactcagtcgccagcaataattcc
gccaagaggaaggaccttatgaagaagagtcttctccagtttattactcagagttccgca
cttgaacagaagtggctcatacggatgattgtaaaagacttaaaacttggcatcagtcat
cagactattttttctgtctttcatcgtgatgctcccgagcttcacaatgtcaccacagat
ctggagaaagtctgtcgacaactgcatgatccatccattgggctcagtgatatttctatc
tgtttattctctccctttaaaccaatgctggccgccatagcagatatcgaacgtattgag
aaggacatgaaacaccaaagtttctacattgagaccaagctggatggtgagcgtatgcag
atgcacaaagatggggatatctatgagtatttctcccgaaatggctttaactatacttct
cagtttggtgcttctcctcaagagggttctcttaccccattcattcatgaggctttccaa
aaagatcagcaagtctgcatcctggatggtgagatgatggcctacaaccctaacacacac
actttcatgcaaaagggaaacaagtttgatattaaaagaatggtggaggagtctgacctg
cagacttgcttctgtgtttttgatgttttgatggtcaataataagaagctcgcacatgag
accttgaagaagaggtatgaaatcctgagtagtgtttttacacccatcccaggtcgaata
gaactagtgcagaaaacacaagctcacaccaagaatgaggtcatcaatgctttgaatgaa
gccatcgataaaagagaagagggaatcatggtaaagcatcccttctccatttacaagcct
gacaagagaggtgaaggatggttgaagattaaacccgagtatgtaacaggattgatggat
gaactagatgtcttacttgttgggggatattgggggaaaggttcccgaggtggaatgatg
tcccatttcttgtgtgctgtggcagagaagccacctctaggggagaagccatctgtgttt
cataccctatgccgtgtgggctcaggttacaccatgaaagaactatatgacttgggtttg
aaattggccaagcattggaagccctttcacaaaagagcccctcccagtagcattttatgt
gggactgagaagccagaagtctatattgagccgtgcaactctgtcattgttcagattaag
gctgcagagatcgtccccagtgacatgtataagacaggctgcacgctgcgcttcccacgg
attgaaaagatcagagaggacaaagagtggtatgaatgtatgacactggaggacatggag
cagcttcgggggaaggcgtctggaaagctcgcctccaagcacttgtatatcactggcaat
gatgaaccccaagaaaaaaagaggaaagttgtcccgaaggtgaagaaagccattggtatc
atggagcacttcaaagcccctaacctttccagtgtaaacaaagtctccaatgtattcgaa
gatgtggaattttgtgttatgagcggtctagacagccaccccaagcctgtcctggagaac
aaaattgcagaatttggaggttacatagtacagaatccaggcccagacacatattgtgtc
gtcgccgggtctgagaacatccgagtgaaaaacatcatttcttcagacaagcatgatgtg
gtcaagcctgattggcttctggagtgttttgaaaaccagagctgtgtgccctggcagcct
cgccacatgatccacatgtgcccgtccaccaagcagcattttgcttgcgaatatgacagc
tacggggacagttactttgtcgacacagacctggagcaactaaaggaagtgttttcagga
attcaacagtccagtggacaaactccaaaggaaatggcctccgtgattgctgatctagag
tatcggtattcctgggaccactccccgctgaatatgtttcgccttcttaccgtttatgtg
gacctgtatcaggtcattagcgactcgagcacccaagtcgagggcacgaggttagccatc
actgccctggagcttcgatttcgtggggcccaagtggtttcttctttagctgaaggcgtg
tcacacgtaatcattggggaggaccatagccgagttgttgattttaaagcgtatcggaga
actcttaagagaaagttcaaaattctgcgagaagattgggtcattgattccatcaataag
tgtgagttacaggaggaaaaccagtatctggtctga
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