Suncus etruscus (white-toothed pygmy shrew): 126020203
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Entry
126020203 CDS
T09902
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126020203 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126020203 (EFTUD2)
Spliceosome [BR:
setr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126020203 (EFTUD2)
Complex C
U5 SnRNP specific factors
126020203 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
126020203
NCBI-ProteinID:
XP_049637622
LinkDB
All DBs
Position
1:complement(191990079..192032164)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGREAKDLDEMDDDDEDEDVGDHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacctgtacgatgagtttgggaattatattggaccagagcttgactctgat
gaagatgatgatgaactgggcagagaggccaaagaccttgatgagatggatgacgatgat
gaagacgaggatgttggtgatcacgatgacgaccacccaggcatggaggtggtgctgcac
gaggacaagaagtactatcctactgcagaggaagtgtacgggcctgaggtggagaccata
gttcaggaggaggacacacagccgctgactgagcctattattaaaccagtgaaaaccaag
aaattcactctgatggagcagacattgcctgtcacagtgtatgaaatggatttcctggct
gatctgatggataattcagagcttatcagaaatgtcactctttgtgggcacctccaccat
ggcaagacgtgtttcgttgactgtctgattgagcagactcacccggaaatcagaaagcgc
tacgaccaggatctctgctacactgacatcttgttcacggagcaggagagaggtgttggc
atcaagagcacaccagtgacagtggtcttacctgacaccaaagggaaatcatacctcttc
aacatcatggacacaccaggacatgtgaatttttctgatgaagtcacagccggcttgcgc
atctccgatggagtggtcctcttcatcgatgctgctgagggcgtgatgctgaacacagag
cggctgatcaagcatgccgtgcaggaaaggctggctgtcaccgtgtgcatcaacaagatc
gaccggcttatcctggagctgaaactgcctcccaccgacgcttattacaagctgcgccac
attgtagacgaggtcaatggactgatcagcatgtactccacggacgagaacctgatcctg
tccccgctcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgccgacacctttggtgatattaactaccaggagtttgct
aaaagactctggggtgacatctacttcaatcccaagacgcgaaagttcaccaagaaagcc
ccgaccagcagctctcagagaagcttcgtggagtttatcttggagcccttgtataagatc
ctggcccaggtggtgggtgatgtagacactagcctcccaaggactctggatgagcttggt
attcacctgaccaaggaggagctgaagctgaatatccgccccctcctcaggctggtgtgc
aagaaattcttcggcgagttcacaggcttcgtggacatgtgtgtgcagcacatcccatct
ccgaaggtgggcgccaagccaaagatcgagcacacctacacgggcggcgtggactccgac
ctcggcgaggccatgagcgactgtgaccccgatggacccctgatgtgccacaccacaaag
atgtacagcaccgatgacggagttcagttccacgcctttggccgggtgctcagtggcacc
atccacgcagggcagccagtaaaggtgctgggggagaactacaccctggaggatgaggag
gactcacaaatctgcaccgtgggccgcctgtggatctccgtggccaggtaccatattgaa
gtgaaccgagttcctgctggcaattgggtgctgatagaaggcgtggatcaaccaattgtc
aagactgcaaccatcacagagccccggggcaatgaggaggcccagattttccggccctta
aaattcaataccacatctgtcatcaagattgctgtagaaccggtcaacccctcggagcta
cccaagatgctggatggcttgcggaaggtcaacaagagctacccatctctcaccaccaag
gtagaagagtctggcgagcatgtgatcctgggcacgggcgagctttacctggactgcgta
atgcacgacctgcgcaagatgtactcagagatcgacatcaaggtggctgaccctgtcgtc
acattctgtgagacggtggtggagacatcctccctcaagtgctttgccgaaacgcccaac
aagaagaacaagatcaccatgattgcggagcccctggagaagggcctagctgaggacatc
gagaacgaagtggtgcagataacgtggaaccggaagaagctgggagagtttttccagacc
aagtacgattgggatttgctggctgctcgctcgatctgggcttttgggcctgatgccact
ggccccaacatcctggtggacgataccctgccctctgaggtggacaaggctctccttggc
tcagtgaaggacagcatcgttcaagggttccagtgggggaccagagaggggcccctctgc
gatgagttgattcgtaacgtcaagtttaagatcctggatgctgtggttgcccaggagccc
ctgcaccgaggcgggggccagatcatccccacagcgaggagagtcgtctattcagccttt
ctcatggccacaccgcgtctgatggagccgtactactttgtggaggtgcaggcccctgca
gactgtgtgtccgctgtctatactgtcctggccaggcgcaggggccacgtgacacaggac
gcgcccattcccggctcccccctctataccatcaaagcttttatccccgccatcgactct
tttggttttgagacagatctgcggacccacacccagggccaggccttctccctgtctgtc
ttccaccactggcagattgtccctggtgatcctctggacaagagcattgtgatccgtccc
ctggagccccagccagcccctcacctagctcgggaattcatgatcaaaacccgacggagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgaccctatgttgctggag
ctcgccaagcaggatgttgtgctcaactaccccatgtga
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