Suncus etruscus (white-toothed pygmy shrew): 126020561
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Entry
126020561 CDS
T09902
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126020561 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126020561 (SMG6)
03032 DNA replication proteins [BR:
setr03032
]
126020561 (SMG6)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
126020561 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
126020561 (SMG6)
DNA replication proteins [BR:
setr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
126020561 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
DUF5539
Motif
Other DBs
NCBI-GeneID:
126020561
NCBI-ProteinID:
XP_049638003
LinkDB
All DBs
Position
1:158499560..158802939
Genome browser
AA seq
1412 aa
AA seq
DB search
MAEGLERVRISASELRGILATLTPQAGARENMKEPRQRKDNRRPDLEIYKPGLSRLRNKT
KVKEPSGNDECKDEMVNDRDSSVGNGTQHIKDVCKELNSQQQNGPIDAENVEAQDSFSRT
AGQEDRSLRIIKRTKKPDMQIYQPGRRLQTITKEINNRVDEEEILNQVEQLRVEENESRG
NTKEQAVNKVDKDETEKNLDNDRVKLVVKGEKGKRIEKGEGVKKVIDDPGQGKPGSAKRY
SRSDKRRNRYRTCSTSSAGSNNSTEGAGMTDNGCRRRRQDRTKERPRLKKQVSMSSTDSL
DEDRIDEPDGPRKSSERTKLLERSWSGRGEGEQKSNGKENRGTLRVTFDAETMNKDSVTV
RSGREVDRIKPDKALSSAGRGSEKQESKNLKQELRGRGRGILILPAHTTLSVSSATSPES
TSLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDEVSPTS
WGDSRQAQASFYKFQNSDNPYYYPRTPGPTSQYPYTGYSPLQYPVGPANGVYPGPYYPGY
PAPSGQYVCSPLPASTMSPEEMEQHMRNMQQQELHRLLRVADNQELQLSNLLSRDRISPE
GLEKMTQLRAELLQLYERSILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDPNVENP
EQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQR
CMICQGDIARYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVY
YYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEMELNPDQWRKGKKSTFRHVG
EDTTRLEIWIHPSHPRSSKGTESGKDSEQENGLGSLSPNDLNKRFILSFLHAHGKLFTRI
GMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVI
QEQAAALGLAMFSLLVQRCTYLLKESAKAQLSSPEDEDDQDDIKVSSFVPDLKELLPSVK
VWSDWMLGYPDTWNPPPTALDLPSQVAVDVWSVLADFCNILTAVNQSEVPLYKDSDDDLT
LLTLEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQEEPLLA
FKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEESEAEGSGGEDDIRELRA
KKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLASLAQLLE
SRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESRDSCLRA
LTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPTNKEEPIRLLREVV
LLTDDRNLRVKALTRNVPVRDIPAFLSWAQVG
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggctggagcgggtccggatctccgcgtcggagctgcgagggatcctggcc
accctgacgcctcaggccggggccagagaaaacatgaaggagcccaggcagcgtaaagat
aatagacgcccagatctggaaatctataagcctggtctttctcggctaaggaacaaaact
aaagtcaaggaaccatctggcaatgatgaatgtaaagatgaaatggttaatgatcgggat
tcttctgttggaaatggaacacagcacattaaagatgtttgcaaggaattaaacagccaa
cagcaaaatggcccaatagacgcagaaaatgttgaggcgcaggattctttttctaggact
gctggacaagaggatcgaagtctaaggattatcaagagaacaaagaaacctgacatgcag
atatatcagcctgggaggcgtttgcagacaattaccaaagaaataaataaccgggtggat
gaagaagaaattcttaaccaggttgaacaactgagagtggaggaaaatgagagtagggga
aatacaaaagagcaggctgtgaataaagtagacaaagatgagacagaaaagaacctagac
aatgacagagtaaagcttgttgtaaagggagaaaaaggaaagagaattgaaaagggggaa
ggggtaaagaaagtgatcgatgatcctggacaggggaagcctggttctgcaaagcgctat
tcccgttcagacaaacgaaggaaccgctaccgcacctgcagtactagttcagctggtagc
aacaatagcaccgaaggggctggcatgactgataatggatgtcgccgccgtcgccaggat
cgaaccaaggagagacctcggttaaagaaacaagtctctatgtcttcaactgactcctta
gatgaggacagaatagatgaacctgatgggcccaggaagagctcagaaaggacgaaactt
ttagaaagaagttggtctggccgtggtgagggagagcagaaaagcaatggtaaagaaaat
agaggcactcttcgtgtcacttttgatgcagaaaccatgaacaaagattctgtcacagta
aggtcaggcagagaggtggataggataaagcctgacaaggccttgagcagtgctggcaga
ggctccgagaagcaggagagcaaaaacctgaaacaggaacttcggggtcgtggccgtggc
attcttattctacctgcccataccactctgtctgttagttcagctacttctccagaatct
acatctttgggacctcggcttttatttggatcaggtagtaaaggatctcggagttggggt
cgtggaggtaccactcggagattatgggacccaaataatcctgatcagaaacctgctcta
aagagccagacacctcagctacattttttagacactgatgatgaagtgagccctacttct
tggggtgactcacgccaggctcaggcatctttctataagtttcaaaattctgacaacccc
tattactatccccgaacaccaggccctacttcccagtacccttatacaggctatagccct
ctgcagtatccagtgggccctgcgaatggggtgtacccaggaccctactatccaggctat
ccagctccatcaggacagtatgtttgtagccctcttcctgccagcaccatgagtcccgag
gagatggagcaacacatgaggaacatgcagcaacaagaactacatcgacttctccgggta
gctgacaaccaggaactacaactcagtaacttgctctccagggaccgcatcagtcctgaa
ggcctggagaagatgactcaactcagagctgagctactgcagctgtatgaacgctctatt
ctattagatattgagttctctgataatcagaatgtggatcagatcctgtggaagaatgct
ttctatcaggtaattgagaagttcaggcagcttctcaaggatccgaacgttgagaaccca
gagcagatacggaacagacttttggagctcttggatgagggtagtgacttttttgatagt
ttgcttcagaagcttcaagttacttacaagttcaaactggaagactacatggatggtctt
gccattcgcagcaaaccattacgcaagacagtaaaatatgccttgatcagtgcccagcga
tgtatgatttgccaaggagatattgctagatatcgggaacaagccaatgacacagcaaac
tatgggaaagcacgcagttggtacctgaaggctcagcatattgctcctaaaaatgggagg
ccctataaccagttggctctgttagcagtatatacgaggagaaagcttgatgctgtgtat
tactatatgcggagtttagcagccagcaaccctatcttgactgccaaggagagtcttatg
agcttgtttgaagagaccaaacgaaaggcagaacagatggaaaagaagcaacatgaggaa
atggaactaaaccctgaccagtggcggaaaggaaagaagtctacatttcggcatgttgga
gaggacaccacccgcttggagatctggattcatccatcccatccacgttcctccaaggga
actgaatctgggaaagattctgaacaggaaaatgggctgggtagcctgagtcccaatgat
ctgaacaaaaggttcatcctcagttttctccatgcccatgggaagctgtttacccggatt
gggatggagacattccctgcagtcgctgagaaggttctcaaggagttccaggtattgctg
caacatagtccctctcctattggaagtactcgcatgctgcagcttatgactatcaacatg
tttgctgtacataactcccagctgaaagactgcttctccgaggagtgtcgttctgtgatt
caggagcaagccgcagccctgggcttggccatgttttctctcctggttcaacgctgcacc
tacttacttaaggagtctgccaaagctcaactgtcctctcctgaggatgaggatgaccaa
gatgacatcaaggtatcttcctttgtcccggacctgaaggagttgctccccagtgtgaaa
gtttggtcagattggatgctcggttacccagatacctggaatcctccacccacagccttg
gatctgccttcacaggttgctgtagatgtgtggtcagtgctggctgatttctgtaacata
ctgactgccgtgaatcagtctgaggtgccgctgtacaaggactctgatgatgacctcacc
cttcttactctggaagaggatcgtcttctctcgggctttgtccccttgctggctgcccct
caggacccctgctacgtggagaaaacctcagataaggttattgcagccgactgcaaaagg
gtcacagtgctgaagtattttctggaagccctttgtggacaagaagagcctctgctggca
ttcaagggtggaaaatatgtgtcagtggcacccgtcccagacaccatgggaaaggaaatg
ggaagccaagagggaaaacaactggaagatgaggaggaggatgtggtaattgaagacttt
gaggaagaatcagaggctgaaggcagcggaggtgaagatgacatcagggaacttcgggcc
aagaagctggctttggccagaaagatagccgagcagcaacgccgccaagaaaagatccag
gccgtcctggaagaccagagtcagatgaggcagatggaactcgagatcagacccttgttt
ctcgtaccagacaccaatggcttcattgaccacctggccagtctggcacagcttctggag
agcaggaagtacatcctggtggtgccccttattgtgatcaatgagctggacggcctggcc
aaggggcaggagacagaccaccgtgctggaggctacgcccgtgtggtacaggaaaaggcc
cgaaaatccattgagttcctcgagcggcgattcgagagtcgagactcctgcctccgggct
ctgaccagccgtggcaatgaacttgaatctatcgctttccgcagtgaggacatcactggc
cagttgggtaacaacgatgacctgatcctctcctgctgcctccactactgcaaagacaaa
gctaaggactttatgcccaccaacaaagaggagcccatccggctgctgcgggaggtggtg
ctgttgaccgatgaccgtaacctgcgagtgaaggcgctgacgaggaatgtgcctgtgcgg
gacatcccagccttcctctcatgggcccaggtgggctga
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integrated database retrieval system
