Suncus etruscus (white-toothed pygmy shrew): 126027709
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Entry
126027709 CDS
T09902
Symbol
RAPGEF6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04015
Rap1 signaling pathway
setr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
126027709 (RAPGEF6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
126027709 (RAPGEF6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
RA
PDZ
RasGEF_N
cNMP_binding
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
126027709
NCBI-ProteinID:
XP_049642664
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All DBs
Position
14:33849990..34060749
Genome browser
AA seq
1514 aa
AA seq
DB search
MNSPVEPRARQALKKKPPERTPEDLNTIYSYLHGMEILSNLREHQLRLMSARARYERYSG
NQILFCSETIARCWYILLSGSVLMKDSMVLPPCSFGKQFGGKRGCDCLVLEPSEMIVVEN
SKENEDSILQREIPARQSRRRFRKINYKGERQTIIDDTDVNDYLSLPADLTKMHITENPH
PQVAHVSSSQSGCSIASDSGSSSLSDIYQATESEVGDVDLTRLPEGPVDSEDEEEEDEEI
DRTDPLQGRDLVRECLEKEPADKTDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEV
VEQAGAIILEDGQELDSWYVILNGTVEISHSDGKVENLFMGNSFGITPTMDKQYMHGVVR
TKVDDCQFVCIAQQDYCRILNHVEKNTHKVEEEGEIVMVHEHRELDRSGTRKGHIVIKAT
AERLIMHLIEEHSIVDPTYIEDFLLTYRTFLQSPLDVGIKLLEWFKVDSLRDKVTRIVLL
WVNNHFNDFEGDPALTRFLEEFEKNLEDTKMNGHLRLLNIACAAKAKWRQVVLQKASRES
PLHFSLNGGSEKGFGIFVEGVESNSKAADAGLKRGDQIMEVNGQNFENITFAKALEILRN
NTHLALTVKTNIFVFKELLSRTEQEKTGVLHIPKIAEKKSNRHSIQDVPGDIEPTSQEKG
NKKIKANTVSGGRNKIRKILDRTRFSILPPKLFSDGGLSQSQDDSIVGTRHCRHSLAILP
IPGTLSSSSPDLLQPTTSMLDFSNPTAVGFYYIPDQVIRVFKADQQSCYIIISKDTTAKE
VVCQAVHEFNLTGTSDTYSLCEVSVTPEGVIKQRRLPDQFSKLADRIQLNGRYYLKNNME
TETLCSDEDAQELVKESQLSMLQLSTIELATQLSMRDFDLFRNIEPTEYIDDLFKLDSKT
GNTHLKEFEDIVNQETFWVASEILTESNQLKRMKIIKHFIKIALHCRECKNFNSMFAIIS
GLNLSCVARLRGTWEKLPSKYEKHLQDLQDIFDPSRNMAKYRNILSSQSMQPPIIPLFPV
VKKDMTFLHEGNDSKVDGLVNFEKLRMIAKEIRQVVRMTSANMDPAMMFRQRKKRWRSLG
SLSQGSTNSNLLDVQGGAHRKRARRSSLLNAKKLYEDAQMARKVKQYLSGLDVDTDEEKY
QLMSFQWEPAYGTLTKNINEKRAAKSSEMSPVPMRSVGQVAKAHLHQPHRVSQVLQVPAV
NLHPSRKKGQTKDAITLSTGLPQKVLGATEEVGGKKHIEDTISVASSLHSTPPASPQSSP
RKGYTLLPSAKSDNLSDSSHSEISSRSSLVSNCSVDSMSAALQDDRYSSQTVAVPESTGA
LEKTEHPSGIGNHSQVGSGWALSKPPLIKSLAVSSSMSSEEISHEHVILEAADSGRGSWT
SCSSNSHDNFQSLPNPKGWDFLNSYRHSHLDGPIAEVESTDCDPYSSPKSCSRTCGQCIG
NLETNQVKQNWASSSSHSDSYEPNYGTVKRRVLESVSVESSERLDPKDGTDPLYKTVTSS
TEKGLIENEQVSAV
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgaactcccccgtggagccccgagctaggcaggcgctgaagaagaagccgcccgagcgg
accccggaggatttaaatactatttattcctaccttcatggaatggaaatactatcaaat
ctcagggaacatcaacttagattaatgtctgcaagagcacgctatgagagatacagtggc
aatcagattcttttttgttcagaaactattgccagatgttggtatatcctgctttctgga
tctgtactcatgaaagactccatggtcttgcctccttgcagttttggtaagcagtttgga
ggaaaaagaggctgtgattgtcttgtattagagccttcagaaatgattgtggtagagaat
tccaaagaaaatgaagatagtattttacaaagagaaattcctgccagacaatctcgacga
aggtttcggaaaataaactacaagggagaacgtcagactattattgatgatacggacgtt
aacgactatttatctcttccagccgatcttaccaagatgcacatcacagaaaatcctcat
ccgcaggtggctcatgtatcttctagtcagtctggttgtagcatcgccagtgactctggg
agcagcagtttatctgacatatatcaggccacagaaagtgaagtaggagatgtagattta
acacgtcttccagaaggacctgtcgattctgaagatgaagaagaagaagatgaagagatt
gatcgaacagatccattgcaagggcgagatcttgttcgggaatgtcttgaaaaagaacct
gctgacaaaactgatgatgacattgaacaattactggagtttatgcatcagcttcctgct
tttgcaaacatgaccatgtctgtaaggagagaactttgttcggtgatgatttttgaagta
gtagagcaggctggagctattattcttgaagatgggcaagagcttgattcatggtatgtc
attttaaatggcactgtagaaataagtcattcagatggaaaggtggaaaatctctttatg
ggaaatagttttggtattacacccacgatggataagcagtacatgcatggagttgttagg
actaaagttgatgattgccagtttgtctgcatagctcagcaggattattgtaggatttta
aaccatgtggaaaaaaatactcataaagttgaagaagaaggagaaattgttatggtacat
gagcaccgtgagctagatcgaagtggaacccgcaaaggacatattgtaatcaaggcaaca
gctgaacgtctcattatgcatttgatagaagaacattctattgtggatccaacatatata
gaagattttctattaacttacagaacgtttcttcaaagtccgttggatgttggaatcaaa
ttgttggaatggtttaaagttgacagcttaagggataaggtaacacggattgtattatta
tgggtaaataatcattttaatgattttgaaggtgatcctgctctgacacgatttttggag
gaatttgaaaagaatctggaagatacaaaaatgaatggtcatcttcggttattaaatatt
gcctgtgctgcaaaggctaagtggagacaggttgtattgcagaaggcttcccgtgagtcc
cctctgcattttagccttaatggaggaagtgaaaaaggatttggtatttttgtggaagga
gtagaatcaaatagtaaagctgctgatgcaggactgaaacgtggtgatcagataatggaa
gtgaatggacaaaactttgagaatattacttttgcgaaggcccttgaaattctgagaaat
aatacccatcttgcacttactgtaaagaccaacatatttgtgttcaaagagttacttagt
aggactgaacaggagaaaactggtgttcttcatattcccaaaattgctgaaaaaaaaagt
aatcgccattcaatccaggatgtaccaggagatattgaaccaacatcacaggaaaaagga
aataagaaaataaaagcaaatactgtttcaggtggaagaaacaaaatcagaaaaattttg
gatagaacacgatttagtatcttgcctccaaaattgtttagtgatggaggcctgagccaa
tcacaagatgatagtattgtgggaacaagacactgtaggcacagtctagctatattgcct
attcctggaacactctcatccagcagtcctgatctcttacaacctacaaccagtatgttg
gacttttcaaatcctacagctgttggtttttattatattcctgaccaagttataagagtt
ttcaaggcagatcaacaaagttgctacattatcattagtaaagacactacagctaaagaa
gttgtttgtcaagctgttcatgaattcaatttgactggtacatcagatacatattctctc
tgtgaagtttctgttactccggagggtgtcataaaacagagaagacttccagaccagttc
tccaagttagctgatagaattcagcttaatggaaggtattatttaaagaataacatggaa
acagaaaccttatgttctgatgaagatgcacaagaattagttaaggagagccagctatcc
atgctgcagcttagtaccattgaattggccactcaactgtcaatgagagactttgatttg
ttccgaaatattgagcctactgaatacattgatgacctttttaagttagattccaaaaca
ggaaatactcatttgaaagagttcgaggacattgtaaaccaagaaactttctgggttgcc
tcagagattttaactgaatcaaatcaacttaaacgaatgaagattattaaacattttatt
aaaattgcacttcattgtcgggaatgtaagaacttcaattccatgtttgcaataataagt
ggcctgaacttatcatgtgtagctcgactcagaggaacttgggaaaagttaccaagcaag
tatgagaaacatctccaagatctacaagacatatttgatccatctagaaatatggcaaag
tacagaaatattcttagtagtcaaagtatgcagcctccaattattccacttttccctgtt
gtcaagaaagatatgacatttttacatgaaggaaatgactccaaagtagatggtttagtg
aactttgagaagctaagaatgattgccaaggaaatccgtcaagttgttcgaatgacttct
gctaacatggatccagctatgatgttccggcagaggaagaagaggtggcgaagtctgggg
tcactgagtcaaggcagcacaaactcaaacttgctagatgttcaagggggtgcccacaga
aaaagggcacgccgtagctccctgcttaatgcaaagaagctctatgaggatgcccagatg
gcaaggaaagtgaagcagtatctctctggtttggatgtagatacagatgaagagaagtac
cagctgatgtcatttcagtgggaacctgcatatggtaccttaaccaagaacataaatgag
aaaagggcagccaaatcatcagaaatgtctccagtgcctatgagatcagttggccaagta
gctaaagctcacttgcatcagccacacagagtaagccaggtgcttcaggtgccagctgtt
aatttgcatcccagcaggaagaaaggacaaacaaaagatgccatcacattgagtacaggt
ttacctcagaaagtcttaggagcaactgaagaagtgggtggtaagaaacatatagaagac
actatttctgtggcatcatctttacattctactcctcctgcatctcctcaaagttcccct
cgcaaaggttatacactcttaccatcagctaaatctgacaacttatctgactccagccat
agtgagatttcttcacgatccagccttgtgagcaattgttctgttgactccatgtctgca
gctctgcaggatgatcgatattcttcccagacagtggcagtccctgaatccactggggca
ttggaaaagacagagcacccctcggggataggaaatcacagtcaagttggctctgggtgg
gcactctcaaagccacctctaatcaagagtttggctgtctcatcttctatgagcagtgaa
gagatttctcatgagcatgtaattttagaagcagctgatagcggtcgtggaagttggact
tcatgttcaagcaactcccatgacaacttccaaagccttccaaatccaaaaggctgggac
tttttgaactcctatcgacactcccatttggatggacccattgctgaagttgaatccact
gattgtgacccttactcatctcctaaaagctgctctagaacttgtggtcagtgtatagga
aaccttgagactaaccaggtaaaacagaattgggcctcctccagttctcattcagactca
tatgaaccaaactatgggacagttaaaagaagagttttggaaagtgtctcagttgagtct
tctgaacgcttggacccaaaggatggcacagacccactctataaaactgtcacttcaagt
acagaaaagggcttgattgaaaatgaacaagtttctgcagtctag
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