Shewanella eurypsychrophilus: FM038_014645
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Entry
FM038_014645 CDS
T07746
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03030
DNA replication
seur03410
Base excision repair
seur03420
Nucleotide excision repair
seur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM038_014645
03410 Base excision repair
FM038_014645
03420 Nucleotide excision repair
FM038_014645
03430 Mismatch repair
FM038_014645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seur03032
]
FM038_014645
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_014645
Enzymes [BR:
seur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FM038_014645
DNA replication proteins [BR:
seur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FM038_014645
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FM038_014645
NER (nucleotide excision repair)
GGR (global genome repair) factors
FM038_014645
MMR (mismatch excision repair)
DNA ligase
FM038_014645
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FM038_014645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH_2
Phage_YunG-like
Motif
Other DBs
NCBI-ProteinID:
QPG60489
LinkDB
All DBs
Position
complement(3507432..3509384)
Genome browser
AA seq
650 aa
AA seq
DB search
MSEFIFNEQHRSIIHKLELNIELHIIEKAINEQKFDSLSNDSLVGLLKIANALYRSGTPI
IKDTQYDLLLKDFSIKQPEHPYLNSVEPEILAESKTVALPQKMLSTDKAYSFEEIKKWID
RLLKAAKEVQIDPDEVMIRVTPKLDGYAAFDDGETLYTRGDGVRGQDITRAITRGLRVAN
DGKRGLGAGEIVISKNYFDEKLTHLFENSRNIQAGIIAEKKVDENIQQAINEGACLFYPF
RLLENRTEHYSKILSDFESIVDEIWNSVDFDIDGIILEVTNEAIKDHMGATRKFHRWQIA
FKVNNDGVEVEVLDVIPQTSRTGRVTPVAKLVPTKLSGATISRVTVHHYNMVKTSGIGPG
AVIQLVRSGLVIPKIEKVIKKVEPKLAELCPSCESRLLWESDNLICPNKTDCPAQTENTL
IHFFKTLGNNDGFGPKVIERLASFGKKHIHEIYAIEAHHFSTFKFGDKTSKNLFDQLRVS
REVEIEDWRFLSAFGVSRLGAGNCDKLLQHHSLTELFDLSAEVIVKIDGFAEVSAEAIVE
GLKKVREEFFKVYELGFNLSVTPKQSGLKSVDSPLAGKLVVFTGSMTQGSRGDMEKHAKA
LGAKVAKSVTGKTTYLVTGEKVGEIKINAAKDKGVSVLSEQEYLDLLANV
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatttatatttaatgaacaacaccgctcaataattcataaactagagctaaac
attgagttacacattattgagaaagcaataaacgagcaaaagtttgacagcctttctaat
gattcattagtgggtttattaaagattgccaatgccctatatcgctctggtactcccatt
attaaagatacgcaatatgacttattacttaaagatttttcaataaagcaaccagagcac
ccttatctgaattcagtagagcctgaaatacttgctgaaagcaagactgttgcattaccc
caaaaaatgctctccaccgataaagcttattcatttgaagagatcaaaaaatggattgat
agacttctgaaagcagcaaaagaagttcaaatcgatcccgatgaagtgatgatccgcgtg
acaccaaagcttgatggatatgccgcttttgatgatggtgaaacattatatacccgtggt
gatggcgtaagagggcaggatattacccgtgctattactagagggctaagggtagccaat
gacggtaaacgtggtttaggagcgggtgaaattgtcatcagtaaaaactattttgatgaa
aagctaactcatctctttgagaattcgagaaatattcaagcagggattattgctgaaaag
aaagttgatgagaatattcagcaagcaataaatgaaggtgcttgtctgttttaccctttc
agattactagaaaacagaactgagcattactctaaaattctttcagactttgaatctatt
gttgatgaaatatggaactcagttgattttgatattgacggtatcattcttgaagttacc
aatgaggctataaaggatcatatgggggccaccagaaagtttcataggtggcaaattgct
tttaaggtcaacaatgatggtgtcgaagttgaggtgttagatgttattcctcagacttcc
agaacaggtcgtgtaacccctgtcgcaaagctagttcctacgaagttaagtggcgcaact
ataagcagagtgacagtgcatcactacaacatggttaaaacaagtggcattggtcctgga
gctgttatccagttggtacgaagtggtctagtcattccaaagattgagaaagtcattaag
aaagtagagcctaaattagctgagctatgtccgagttgtgaatcaaggctactttgggag
tctgataacttaatctgcccaaataagactgattgtccagctcaaacagaaaacactctc
attcatttctttaaaacgttgggaaataatgatggctttggacctaaggtaattgaacga
ctagctagctttggtaaaaagcatatacatgaaatctatgccattgaagcacatcacttc
tctacatttaagtttggtgataagacatctaaaaacctttttgatcaacttcgtgttagt
cgcgaagttgaaattgaagattggcgctttctttctgcgtttggtgtaagccgattagga
gctggtaattgtgacaagcttcttcaacatcattcactgactgagctatttgatctatct
gcagaagtgattgttaaaattgatggttttgctgaggtcagtgcagaagcgattgttgaa
ggtttaaagaaggttagggaagagttcttcaaagtttatgagctaggcttcaacttgtca
gtcactcctaagcaatcagggctaaagagtgttgactcaccattggctggaaagttagta
gtatttactggatcaatgacccaaggttctagaggtgatatggaaaagcatgccaaagcc
ttaggagctaaggtcgctaaatcagttacggggaaaacaacttaccttgttactggtgaa
aaagttggcgaaatcaaaattaatgcagccaaggataagggagtgagtgtactttctgag
caggaatatcttgatttattggctaatgtctaa
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