Saxibacter everestensis: LWF01_04185
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Entry
LWF01_04185 CDS
T10942
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sevr Saxibacter everestensis
Pathway
sevr03030
DNA replication
sevr03410
Base excision repair
sevr03420
Nucleotide excision repair
sevr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sevr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LWF01_04185 (ligA)
03410 Base excision repair
LWF01_04185 (ligA)
03420 Nucleotide excision repair
LWF01_04185 (ligA)
03430 Mismatch repair
LWF01_04185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sevr03032
]
LWF01_04185 (ligA)
03400 DNA repair and recombination proteins [BR:
sevr03400
]
LWF01_04185 (ligA)
Enzymes [BR:
sevr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LWF01_04185 (ligA)
DNA replication proteins [BR:
sevr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LWF01_04185 (ligA)
DNA repair and recombination proteins [BR:
sevr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LWF01_04185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LWF01_04185 (ligA)
MMR (mismatch excision repair)
DNA ligase
LWF01_04185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LWF01_04185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
HHH_8
HHH_3
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WGW12979
LinkDB
All DBs
Position
850578..852803
Genome browser
AA seq
741 aa
AA seq
DB search
MRQYRTVAENRTVAEIELKDPSVEVRQTAQRLAEQITQHREAYYQRAAPTISDSEFDELM
QKLEALEDQYPALRTPDSPTQNVGGAVDQSTFAAVNHLERMLSLDNAFSLDELAAWNDRV
TRELGDAKRDYLCELKIDGLAVNLLYENGVLTRAATRGDGRTGEDITANVKTISDIPHRL
TGEGYPSQVEIRGEVFFPIEAFGELNAGLVEQGKPPFANPRNAAAGSLRQKNPAITASRP
LHMLVHGIAAWEGQPGQPPLDRQSHAYELLAEWGLPISEYYKVVDSLKDVDAFIEYYGEH
RHDVSHEIDGVVVKVDELSQQRRLGTTSRAPRWAIAFKYPPEEVTTKLIDIQVNVGRTGR
VTPFAVMEPVRVAGSTVEMATLHNGYEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDLRD
GAEREFVMPTHCPSCGTELREAKAGDKDIRCPNARSCPSQLRERLFYAASRAAFDIEALG
WEAAIALTSPAEPETPPLETEAGLFDLKIEDLADVKIEREVRKKGVLTGEKELVPYFYSR
GTDKKPSAPNANTRKFFQELQKAKEQPLWRVLVALSIRHVGPTAARALAEEFASLEDIRD
ADQERLSAVDGVGPTIAAAVVEWFTVDWHREIVERWAAAGVRMVDERDASIPRHLEGLSI
VVTGTLPTYSRDDAKEAIVSRGGKAAGSVSKNTSFVVVGDSPGSKYDKAIELGIPVLNED
GFRVLLDDGPEAANAVAENPV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagtatagaaccgtggctgagaatagaaccgttgctgaaattgaattgaaggat
ccgtccgtcgaagtccgccagacggcccagcgccttgccgagcagataacgcagcatcgt
gaggcgtactatcagcgggcggcgccgacgatcagcgactcggagttcgacgagctgatg
cagaagctcgaagccctggaggaccagtacccggcactgcgcacacccgattcgccgacc
cagaacgttggtggcgccgtcgaccagtcgacgttcgccgcggtcaaccatctggaacgg
atgctcagtctcgacaacgcgttctcgctggatgagttggccgcttggaacgatcgcgtc
acccgcgagctgggtgatgccaagcgcgactacctctgcgagttgaaaatcgacggcctc
gccgtgaacctgctctacgaaaacggcgtgctcacccgggcggcgacccgcggcgacggc
aggaccggcgaggacatcacggccaacgtcaagacgatctccgacattccgcaccgcctc
accggtgagggctatcccagtcaggtggagatccgcggcgaggtgttcttcccgatcgaa
gccttcggcgaactgaacgctggcctagtcgaacaaggaaagccgcccttcgccaacccg
cgaaacgccgctgccggttcgctgcgccagaagaacccggcgataacagccagccgcccg
ctgcacatgctggtgcacggcatcgccgcctgggaaggtcagccgggccagccgccgctg
gaccggcagtcccatgcgtacgagctcctggctgaatggggtctgccgatcagcgagtac
tacaaggtggtcgattcgcttaaagacgttgatgccttcatcgagtactacggcgaacac
cgccacgatgtgagccatgagatcgatggggtcgtcgtcaaggtcgatgagctcagtcaa
cagcgcaggctcggcaccacgagtcgcgcgccccgctgggcaatcgcattcaagtacccg
ccggaagaggtgaccaccaagctgatcgacatccaggtgaatgttggcaggactggtcgc
gtcacaccgttcgccgttatggagcccgtgcgggtagctggttcgacagtagaaatggcg
accctgcacaacggttacgaggtcaagcgcaagggagtgctgatcggcgacacagttgtg
ctgcgtaaagccggtgacgtcatccctgaggtgcttggaccggttgtggatctgcgtgac
ggcgccgaacgcgagttcgtcatgccgactcactgcccctcctgcggcaccgagcttcgg
gaagccaaagccggcgacaaggacatccgctgtccgaacgcacgctcctgcccatcgcaa
cttcgtgagcggctgttctacgcggcatcgcgtgctgccttcgatattgaagccctcggc
tgggaagccgccatcgcactcacttcgccggccgagcccgaaactccgccactggaaacc
gaagcgggactgttcgacctgaagatcgaagacctggccgacgtgaaaatcgagcgggag
gtgcggaagaagggcgttttgaccggtgagaaagaactcgtgccgtacttctactcccgc
ggcaccgataagaagcccagcgcacccaacgcaaacacccgaaaattcttccaggaactg
cagaaggccaaggaacaaccgctgtggcgggtgttggtcgcactatcgattcgtcacgtc
ggaccgactgccgcgcgggcactcgcggaggagtttgcctcgctcgaggacattcgcgac
gccgatcaggaacggctgagtgcggttgacggtgtcgggccgacgattgccgccgcagta
gtggaatggttcacggtggactggcaccgggagatcgtcgaacgatgggccgctgccggt
gtccggatggtcgacgaacgagatgcttcgattccgcgccacctcgagggtctcagcatc
gtggtgaccggaaccttgccgacctacagccgcgacgacgcgaaggaagctatcgtgagc
cgcggcgggaaagcggcgggaagcgtctcgaagaacacctccttcgtcgtggtcggggac
tcgcccggcagtaagtacgacaaggcgatcgagctaggcattccggtgctgaacgaggac
gggttccgcgtgctgctggacgacggtccggaagcagcgaacgcggtcgcggagaatccc
gtctga
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integrated database retrieval system
