Salmonella enterica subsp. enterica serovar Schwarzengrund: SeSA_A3947
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Entry
SeSA_A3947 CDS
T00743
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sew
Salmonella enterica subsp. enterica serovar Schwarzengrund
Pathway
sew03030
DNA replication
sew03410
Base excision repair
sew03420
Nucleotide excision repair
sew03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SeSA_A3947 (ligA)
03410 Base excision repair
SeSA_A3947 (ligA)
03420 Nucleotide excision repair
SeSA_A3947 (ligA)
03430 Mismatch repair
SeSA_A3947 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sew03032
]
SeSA_A3947 (ligA)
03400 DNA repair and recombination proteins [BR:
sew03400
]
SeSA_A3947 (ligA)
Enzymes [BR:
sew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SeSA_A3947 (ligA)
DNA replication proteins [BR:
sew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SeSA_A3947 (ligA)
DNA repair and recombination proteins [BR:
sew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SeSA_A3947 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SeSA_A3947 (ligA)
MMR (mismatch excision repair)
DNA ligase
SeSA_A3947 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SeSA_A3947 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ACF89045
UniProt:
B4TZZ8
LinkDB
All DBs
Position
complement(3816318..3818003)
Genome browser
AA seq
561 aa
AA seq
DB search
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPAAQYWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASATCQEQFISRLVW
LGSRSALGLDGMGEASWRALHQTHRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNL
ARRQSFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRD
NPQIKALSRWLSAQHIPGFGS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcgcccgtttacagcaacag
ctcgctgactggaatgacatttactggaaacaaggcgttagcgcggttgacgatagtgtg
tacgaccaactcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcatcctgttgcgcatacgggc
gtacgtaaactcgcggaccggcaggcggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacaaccaaaagtggatggcgtagcggtaacgctggtttatcaaaacggtaaactg
gccagggctatcagccgaggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagacaacacaaggcgcgcttgctaacgcggtgttgcagggc
gaaatctttctacagcgcgaggggcatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaagaaatataccctggcggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcgttgccctttgtgacggatggcgta
gtgatacgcatggctaaagagcccgcggcacaatactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcggctctgtgaaacgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggccgggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgagcggagtaagcctgtaccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggcaacgtgtcaggaacagtttatctccaggctggtatgg
ctgggatcacgatcggcgttgggtctggacggaatgggcgaagccagctggcgggccttg
catcagacgcatcgctttgagcatatcttctcctggcttgccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagtcgtttacccgctggatcatggcgatggatatccccttaacgcaggcc
gcattacaggccagcggcgatcgttcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttgccagcgacgggcgagcgccgtgccgggagagttatcgactggcgggat
aatccgcagatcaaagcgctgagcagatggctgtctgctcagcatattcccggatttggg
tcttag
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