Streptomyces explomaris: SLV14_002346
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Entry
SLV14_002346 CDS
T11122
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sexp Streptomyces explomaris
Pathway
sexp03030
DNA replication
sexp03410
Base excision repair
sexp03420
Nucleotide excision repair
sexp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLV14_002346 (ligA)
03410 Base excision repair
SLV14_002346 (ligA)
03420 Nucleotide excision repair
SLV14_002346 (ligA)
03430 Mismatch repair
SLV14_002346 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sexp03032
]
SLV14_002346 (ligA)
03400 DNA repair and recombination proteins [BR:
sexp03400
]
SLV14_002346 (ligA)
Enzymes [BR:
sexp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SLV14_002346 (ligA)
DNA replication proteins [BR:
sexp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SLV14_002346 (ligA)
DNA repair and recombination proteins [BR:
sexp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SLV14_002346 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLV14_002346 (ligA)
MMR (mismatch excision repair)
DNA ligase
SLV14_002346 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLV14_002346 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
HMBD
Motif
Other DBs
NCBI-ProteinID:
UYB39803
LinkDB
All DBs
Position
complement(2772734..2774950)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAESKVPAAAREEHAQLAEQIEEHRFRYYVKDAPVVSDAEFDKLLRSLEALENE
HPELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDDEELAGWAERIAGELGGDPKS
AGYHFLCELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGDTIP
DLVEVRGEVFFPMEKFLALNERLVADGKPPFANPRNAAAGSLRQKDPKITASRPLHMVVH
GIGARDGLEIDRLSQAYDLLKEWGLPTATHNRVVDSLESVREFIGHYGDAETRRTAVEHE
IDGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGGEREFV
MPAECPECGTALQPAKEGDIDLRCPNARACPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPAEPPLKDEGDLFGLSIEQLLPIKSYVLDPDSGLPKRDPKTGEEKVVTFFANQKG
EPKKNALAMLENIQAAKQRPLARIITGLSIRHVGPVAAEALAREFRSIDRIREADETELA
AVDGVGATIAASLKQWFAEEWHQQIIESWRAAGVRMEEEQTGDEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPDAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcggaatccaaggtgcccgcagcggcgcgggaggagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtattacgtgaaggacgccccg
gtcgtcagtgacgcggagttcgacaagctgctgcgctccctggaagccctggagaacgag
caccccgagctgcgcacccccgattccccgacccagaaggtcgccggggcctacgccacg
gagttcaccgaggtcgagcaccgcgagcggatgctctcgctcgacaacgccttcgacgac
gaggagttggcgggctgggccgagcggatcgccggcgagctgggcggcgatcccaagagc
gcggggtatcacttcctgtgcgagctgaaggtcgacggtctcgccgtcaacctcacctac
gagcagggccggctgacccgcgccgccacccgcggcgacggccgtacgggcgaggacatc
acccccaacgtccgtacgatcgccgagatcccgcaccgcctgaagggcgacacgatcccc
gatctggtcgaggtgcgcggggaggtcttcttcccgatggagaagttcctcgcgctcaac
gagcggctggtggccgacggcaagccgccgttcgccaaccctcgtaacgccgcggccggt
tcgctgcgccagaaggaccccaagatcaccgccagccgcccgctgcacatggtcgtccat
ggcatcggtgcccgcgacggcctggagatcgaccggctgtcgcaggcctacgacctgctc
aaggagtggggcctgccgacggccacgcacaacagggtcgtcgactccctggagtccgta
cgggagttcatcggccattacggcgatgccgagacccgccgtaccgccgtcgagcacgag
atcgacggcgtggtcgtcaagctggacgagatccggctccaggggcggctgggctcgacc
tcccgggcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaag
ctggtcgacatccgcgtcggcgtcggccgtacgggacgggtcacgccgtatgccgtggtc
gagccggtgacggtggccggctccgaggtggagttcgccactctgcacaaccaggacgtg
gtcaaggccaagggggtgctgatcggggacaccgtcgtgatccgcaaggccggcgacgtc
attccggagatcctgggaccggtcgtcgatctgcgggacggcggcgagcgggagttcgtg
atgccggccgagtgccccgagtgcgggacggcgctgcagcccgccaaggaaggcgatatc
gacctgcggtgccccaatgcccgcgcctgccccgcccagatccgtgagcggctgttctac
ctggccggccgcaaatgtctggacatcgagaacttcggctatgtcgcggcgacggcactc
agccagccgctggagcccgcggagccgccgctgaaggacgagggcgatcttttcggcctt
tccatcgaacagctgctgcccatcaagtcctacgtcctcgaccccgattccggtctgccc
aagcgggacccgaagaccggcgaggagaaggtcgtcaccttcttcgccaaccagaagggc
gagccgaagaagaacgccctggccatgctggagaacatccaggcggccaagcagcgcccg
ctggcccggatcatcaccggtctgtcgatccggcatgtgggcccggtggcggccgaggcg
ctggcgcgggagttccgctcgatcgaccgcatccgggaggcggacgagacggagctggcc
gccgtcgacggtgtcggggccacgatcgccgcctcgctgaagcagtggttcgccgaggag
tggcaccagcaaatcatcgagagctggcgggccgcgggcgtccgaatggaggaggagcaa
acgggtgatgagggcccgcggccactggaaggcgtcaccgtcgtcgtaacgggcacactt
cagtcacacaccagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgacc
ggttccgtttcgaagaagaccggattcgtagtggtgggcgacaaccctggttcgaagtac
gacaaggccatgcagttgaaggtccccgtgttggacgatgatggcttcgcggtgctgctg
gagcagggtcctgacgcagcgcgagcggtagctgtcactccacctgaggaggagtga
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