Streptomyces pratensis: Sfla_1842
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Entry
Sfla_1842 CDS
T01647
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfa
Streptomyces pratensis
Pathway
sfa03030
DNA replication
sfa03410
Base excision repair
sfa03420
Nucleotide excision repair
sfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sfla_1842
03410 Base excision repair
Sfla_1842
03420 Nucleotide excision repair
Sfla_1842
03430 Mismatch repair
Sfla_1842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfa03032
]
Sfla_1842
03400 DNA repair and recombination proteins [BR:
sfa03400
]
Sfla_1842
Enzymes [BR:
sfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sfla_1842
DNA replication proteins [BR:
sfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sfla_1842
DNA repair and recombination proteins [BR:
sfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sfla_1842
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sfla_1842
MMR (mismatch excision repair)
DNA ligase
Sfla_1842
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sfla_1842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
ILEI
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ADW03276
UniProt:
A0A8D3WIV2
LinkDB
All DBs
Position
complement(2248313..2250508)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGEQQAQQLTGVPAEVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEH
EHPELRTPDSPTQKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAKDVGGGGY
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALV
EIRGEVFFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG
AREGFGIDRLSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGENRQSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQNVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVMPSECP
ECGTPLRPMKEADIDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAAAALTRPLEP
EEPPLLDEGDLFGLTVEQLLPIRAYFLDPDSGLPKRDPKTGEEKIATVFANQQGEPKKNA
LGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERIDEASEEELAAADGVG
PIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLAAHTR
DGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEEGFAVLLEQGPD
AAREAAVPAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaacagcaggcgcagcagctgaccggtgtgccggcggaggtgcgcgaacgg
cacgcgcttctcgccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccag
ccggtcgtcgacgacgccgagttcgaccggcagatgcgcgcgctggaggccatcgagcac
gaacaccccgagctgcgcacaccggactccccgacccagaaggtcgcgggcccctacacc
acggagttcacctccgtcgaacaccgtgaacgcctgctctccctggacaacgccttcgac
gacggggagctcgccgcctgggccgagcgcgtggccaaggacgtgggcgggggcggatac
cacttcctgtgcgagctcaaggtggacggtctcgccgtcaacctgacctacgagcacggc
aggctcacgcgcgcggcgacccgcggtgacggccggacgggggaggacatcacccccaac
gtccgtacgatcgccgagatccctctgcgcctcaagggcgacgacatccccgcgctcgtc
gagatccggggcgaggtcttcttcccgatggaggccttcgaagggctcaacgcccggctg
gtcgaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggatcactgcgg
cagaaggacccgaaggtcaccgccacccgcccgctgcacatggtggtccacggcatcggc
gcccgcgagggcttcggcatcgaccggctctcccaggcctacgacctgctccgggaatgg
ggcctgcccaccgccagacacaacaaggtggtggagtcgctcgacgaggtccgggagttc
atcgcctggttcggcgagaaccgccagtccgtcgagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccccctgcagggcaggctgggctccacctcgcgcgcgccgcgctgg
gcgatcgcctggaagtacgccccgcaggaggtcaacaccaagctggtcaacatccgcgtc
ggcgtcggacgcaccggccgggtcacgccgtacgcccaggtcgagccggtcgaggtggcg
ggctccgaggtcgagttcgccaccctgcacaaccagaacgtggtgaaggccaagggcgtc
ctcatcggtgacacggtggtgctccgcaaggcgggcgacgtcatcccggagatcctcggc
ccggtcgtcgacctgcgggacggcagcgagcacgcgttcgtcatgccgtccgagtgcccg
gagtgcgggacgccgctgcgcccgatgaaggaggccgacatcgacctccgctgccccaac
gcacgctcttgccctgcccagttgcgggagcgcgtggcctatctggcgggccgtaagtgc
ctggacatcgaccacttcggctatgtggccgccgccgccctgacccgaccgctggagccc
gaggagccaccgctgctggacgagggggacctcttcggcctgacggtggaacaactgctg
cccatccgggcgtacttcctggacccggacagcggactgcccaagcgtgacccgaagacg
ggcgaggagaagatcgccacggtcttcgccaaccagcagggcgagccgaagaagaacgcc
ctcggcatgctggagggcatcgcggcggccaggcaggccccgctcgcccggatcctcacc
gggctgtcgatccggcacgtggggccggtggccgccgtcgaactggcccggcagttccgg
tccatcgagcggatcgacgaggcctccgaggaggaactcgccgcggcggacggggtgggg
cccatcatcgccgcctcggtcaaacagtggttcgccgaggactggcaccgcgagatcctg
cgcaagtggcgggaggccggggtccgcatggaggacgagggcgcgggcgaggacgagggg
ccccggcccctggagggcctcaccgtcgtggtcaccggcacgctggccgcgcacacccgg
gacggcgccaaggacgccctccagagcctcggggcgaaggtcaccggctccgtctcgaag
aagacatccttcgtcgtggtcggcgacaacccggggtcgaagtacgacaaggcgatgcag
ctgaaggtgcccgtgctcgacgaggagggcttcgccgtcctcctcgaacagggaccggac
gccgcccgggaggccgcggtccccgccgaggagtga
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