Sphingobacterium faecium: MUK51_11510
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Entry
MUK51_11510 CDS
T08637
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfae
Sphingobacterium faecium
Pathway
sfae03030
DNA replication
sfae03410
Base excision repair
sfae03420
Nucleotide excision repair
sfae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUK51_11510 (ligA)
03410 Base excision repair
MUK51_11510 (ligA)
03420 Nucleotide excision repair
MUK51_11510 (ligA)
03430 Mismatch repair
MUK51_11510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfae03032
]
MUK51_11510 (ligA)
03400 DNA repair and recombination proteins [BR:
sfae03400
]
MUK51_11510 (ligA)
Enzymes [BR:
sfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUK51_11510 (ligA)
DNA replication proteins [BR:
sfae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUK51_11510 (ligA)
DNA repair and recombination proteins [BR:
sfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUK51_11510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUK51_11510 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUK51_11510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUK51_11510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Nlig-Ia
DNA_pol_lambd_f
RNA_ligase
DUF7666
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UXD67856
LinkDB
All DBs
Position
2640038..2642071
Genome browser
AA seq
677 aa
AA seq
DB search
MSSMDIEQKITALTQELNHYNYQYYVLAQSLISDYDFDQKLKELQTLELQYPEFADPNSP
TQRVGGDVTSKFETVRHRWPMLSLGNTYNQDDLRDFDQRVRKIIGDNFEYICELKFDGLS
ISLTYQQGKLVKAVTRGDGTQGDLVTNNIKTIRSIPIHLKKGHYPEEFEIRGEIFMHKNA
FLRLNAEREENEEQTYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYCDNRNKLFHNHW
ESLQAVKEWGFHVCEHTLKCQSLDDVFGFIDYWDEKRHDLSYEIDGIVIKVNDYGAQEEL
GFTAKNPRWAISYKFKAERVETQLTSISYQVGRTGAVTPVANLKPVSLAGTTVKRASLHN
ANEIARLDLHEGDTVFVEKGGEIIPKIIAANEDKRLPNAPAYVYPTHCPECHTELIRQEG
EAVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGLGDETIETFYKKGILKNVVDIYGLKDH
VDQLQQLDRFGQKSIDNMLKGIEKSKEKPFEKLLFALGIRHVGETIAKKLAQHFKTIDAI
KAASVEEIAMVQDIGIRIAASIHEYLHIPAHEELIAKLKSYGLQFEIEEKEVILDSETLV
GQTFLISGVFINHTREQLTELIESNGGKMVSSISAKLSYLVAGDKMGPSKLAKAEKLNIK
MINEDELLALINNTTSI
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccatggatattgaacaaaaaataactgcactaacgcaggagctcaaccactat
aactatcagtattatgtgttggcacaaagcctgatttcagattatgatttcgatcaaaaa
ttaaaggagcttcaaacattagaattacaataccctgaatttgctgatcccaactcacct
acgcaacgagtaggtggagatgtaacttctaaatttgaaacagtcagacatcgttggccg
atgctgtcactaggtaatacctataaccaagatgatcttcgtgattttgatcaaagggta
cgcaagataataggtgacaactttgaatacatctgtgagttaaaatttgatggcctatct
ataagccttacttatcaacaaggtaaacttgttaaagctgtaactcgtggagatggtaca
caaggagacttagtgaccaacaacatcaaaacaattagaagtatccctatccacttaaaa
aaaggtcactatcccgaagagttcgaaatcaggggtgaaatctttatgcataaaaatgcc
tttttaagattaaatgccgaaagagaagaaaacgaagaacaaacctatgccaatccgcgt
aattttgctgcaggaacaattaaattacaagactccgcagaagtagctagaagaccttta
gactgtttcttatactttttgtactgtgacaatagaaacaagctatttcacaaccattgg
gaaagccttcaagctgtaaaagaatggggatttcacgtttgtgaacatacactaaaatgt
caatcgttagatgatgtttttggttttattgattattgggatgaaaaaagacacgatcta
agttatgaaatcgatggtattgtaattaaggtaaatgactatggcgcacaagaagaatta
ggttttaccgctaaaaatccacgttgggcgatttcatataaattcaaagcagagcgtgta
gaaacacagttgacatccatcagttaccaagtcggacgtactggagcagttactcccgtt
gccaatttaaaacctgtaagtttagctggtaccacagttaaaagagcttctttgcataat
gccaatgaaatcgcaagacttgatctccatgagggtgatactgtttttgtcgaaaaagga
ggtgaaattatccccaagatcattgcggcaaatgaagacaaaagacttccaaatgctcca
gcgtatgtttatccaacacattgtccagaatgtcacacagaactcatccgccaagaaggc
gaagctgttcattattgccccaatgaagatggatgcccccctcagattattggaaaaatg
caacattttatcggtcgcaaaatgatggatatagaaggacttggtgatgaaacaatagaa
acgttttataaaaaaggaattctcaaaaatgttgttgatatctatgggctaaaagaccat
gtagatcaattacagcaattagatcgtttcggacagaagtccattgacaatatgctgaaa
gggatcgagaaatccaaagagaaaccatttgaaaaattactttttgcattagggattcga
cacgtcggagaaacaatagctaaaaaattagcacaacatttcaagaccatcgatgccatt
aaagcagcctcagttgaagaaatcgcgatggtgcaagatatagggatccgaattgcagca
agtatacatgaatacttacacatcccagcgcatgaagagttaatcgcaaaactaaaatct
tatggtttacagtttgaaattgaagagaaagaagtaattttggatagtgaaactttggtc
ggccaaacatttctcatatctggcgtatttataaatcacacgagagaacaactcaccgag
cttattgaaagcaatggtggcaaaatggtatcgagcatttcagcaaaattaagttatctc
gtagcaggcgacaaaatgggtccctcaaaattagcaaaagcagaaaaactaaatattaag
atgatcaatgaagatgaattattagctttgatcaacaatacaacaagtatataa
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