Spirochaeta africana: Spiaf_2216
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Entry
Spiaf_2216 CDS
T01811
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfc
Spirochaeta africana
Pathway
sfc03030
DNA replication
sfc03410
Base excision repair
sfc03420
Nucleotide excision repair
sfc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spiaf_2216
03410 Base excision repair
Spiaf_2216
03420 Nucleotide excision repair
Spiaf_2216
03430 Mismatch repair
Spiaf_2216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfc03032
]
Spiaf_2216
03400 DNA repair and recombination proteins [BR:
sfc03400
]
Spiaf_2216
Enzymes [BR:
sfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spiaf_2216
DNA replication proteins [BR:
sfc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spiaf_2216
DNA repair and recombination proteins [BR:
sfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spiaf_2216
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spiaf_2216
MMR (mismatch excision repair)
DNA ligase
Spiaf_2216
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spiaf_2216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
PTCB-BRCT
BRCT
HHH_2
Nlig-Ia
DNA_ligase_ZBD
RNA_ligase
DUF3618
C5HCH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFG38252
UniProt:
H9UL59
LinkDB
All DBs
Position
complement(2503349..2505463)
Genome browser
AA seq
704 aa
AA seq
DB search
MSSNDSDRFGQEVDQLIDQLTSYERAYYQQGRSLVSDREYDRLFDRLQQLEKQYPELQRP
DSPTRRVGSDLSVDLPEVPHEIPVLSLDKVYSGQELTDWQLRTQKRAADMAADSPTGVLT
GTPDFICEEKIDGVSIVLYYRTGLLEQAVTRGNGRIGNDVTANIRTIRRVPLRLAEPLTV
AIRGEVYLSRADFAALNATLETPFANPRNLAAGTIRRVKSSGAAAVPLQFFGYDAYGLEG
VDSHHQVLLRLHQLGLPVNSRCAWIHNEAVDADVVREFRAVFPEALVGTAGVLSQFIQAE
IQQRDQLAYDIDGLVAKLDDIGLRERLGYTGHHPRWAVALKFDAPQGVSTIREIDVQVGR
TGRITPVARIEPVLIGGSTVQNVTLHNQEYITGLELAAGDTVSVSKRGDVIPAVEQVLEK
GAAEPPVWQLPEHCPSCGSRLVVRGAHHFCPNTFGCPDQQRGRLRFFAGRDQMDIDGIGP
ETLETLIRLGMVQSVPDLYEADYQQLMDEAGFGERKIAQIRTGIERSKAVPYRRLLPSLG
IPELGPKVTQLLCDAGIGSIDELMQIADTGDHERLSAIHGIGPRIAETVIEQLRLPELRE
VISRLREHGLRFVDEQPETDESVPQIFSGQTWCVTGSFEHFQPRTRAAAEIERRGGSVVS
SVSGKTTHLLAGSGAGSKYDKAVSVGAEVVDEPRFRQLLAEAGS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaatgattctgatcggtttgggcaggaggtcgatcagctgattgatcagctg
accagctatgaacgggcctattatcagcagggccgttccctggtgtcggatcgtgagtac
gaccgcctgtttgatcggctgcaacagctggaaaaacaatatcccgaactgcaacgcccg
gacagcccgacccggcgtgtcggctcggatctcagtgtcgacctcccggaggttccacat
gaaatcccggtactgagcctggataaggtctattccggtcaggagcttactgactggcag
ctgcgaacacagaaacgggccgccgacatggcagccgactcaccgaccggggtgctgacc
ggaacaccggactttatctgcgaggaaaagattgacggcgtctcgatcgtgctgtactac
cgcaccggattgctggaacaggcggtaacccggggcaacgggcgtatcggcaacgatgtc
accgcgaacatccggactatccgccgtgtgccgctgcggcttgctgaaccgcttacggtt
gccatccggggagaggtctatctgagccgtgccgattttgcggccctgaatgccaccctg
gaaaccccgtttgccaacccgcgaaatcttgccgccggcactatacgacgggtgaaaagc
agtggcgcggccgccgtgccgctgcagtttttcggctatgacgcctacggtctggaggga
gttgattcccatcatcaggtgctgctgcgcctgcatcagcttggactgccggtaaacagc
cgctgtgcctggatacataatgaggctgtggatgcagatgtggttcgggagttccgggcg
gtgtttcccgaggcgctggttggcactgcaggggtgctgtcgcagtttattcaggccgag
atacagcagcgggatcaactcgcgtacgatatcgacggtctggtagccaagctcgatgat
atcgggctccgtgaacggctgggatataccgggcatcatccgcgctgggcggttgcgctg
aaattcgatgccccccagggggtgtcgaccatccgcgagattgatgtccaggtcgggcgc
accgggcgtataaccccggttgcgcggatcgagccggtgctgattggcggctccacggtt
cagaatgttaccctgcacaaccaggaatatatcaccgggctggaactggcagccggcgac
acggtctccgtcagcaagcggggagatgttatcccggcggtcgagcaggtgctggaaaag
ggggcggccgagccgccggtctggcagctgcccgaacactgcccctcatgcggcagccga
ctggtggtgcgcggggcgcatcacttctgccccaacaccttcgggtgccccgatcagcag
cgcggcagactgcggttttttgccgggcgtgaccagatggatatcgacgggatcggaccc
gagacactggagaccctgatccgccttggtatggtgcagagtgtgccggatctgtatgag
gcagactatcagcagctgatggatgaggctggcttcggtgagcgcaagattgcccagatt
cgtaccggtatcgagcgcagcaaggcagtgccttatcgccggctgctgccgagcctgggt
attccggagctggggcccaaggttacccagcttttgtgcgacgccggcatcggcagcatc
gatgagctgatgcagatcgccgataccggcgatcatgagcgcctctcggcgattcatggt
atcgggccccgaatcgccgagacagtcatagaacagctgcgtttgccggaactgcgcgag
gtgatcagccggttgcgggaacacggtctgcggtttgtcgatgaacagccggaaaccgat
gaatcggtgccacagattttttccggacagacctggtgtgttaccggcagttttgaacac
ttccagccgcgcaccagggccgccgccgagatcgagcgtcgcggcgggagtgtggtgtca
tcggtgtccggcaagacaacccacctgctggccggcagcggcgccggcagcaagtatgac
aaggccgtcagcgttggagccgaggtggtggatgagccccgtttccgacagctgcttgcc
gaagctggcagctga
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integrated database retrieval system
