Sinorhizobium fredii USDA 257: USDA257_c44900
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Entry
USDA257_c44900 CDS
T02188
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03030
DNA replication
sfd03410
Base excision repair
sfd03420
Nucleotide excision repair
sfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
USDA257_c44900 (ligA)
03410 Base excision repair
USDA257_c44900 (ligA)
03420 Nucleotide excision repair
USDA257_c44900 (ligA)
03430 Mismatch repair
USDA257_c44900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfd03032
]
USDA257_c44900 (ligA)
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c44900 (ligA)
Enzymes [BR:
sfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
USDA257_c44900 (ligA)
DNA replication proteins [BR:
sfd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
USDA257_c44900 (ligA)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
USDA257_c44900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
USDA257_c44900 (ligA)
MMR (mismatch excision repair)
DNA ligase
USDA257_c44900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
USDA257_c44900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Nlig-Ia
HHH_3
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFL53028
UniProt:
I3XAX2
LinkDB
All DBs
Position
complement(4657899..4660052)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNEKKPVEQLTEVEAAEELTFLAAELARHDALYHGQDAPEISDADYDALKRRNDAIEAH
FPALIRDDSPSRKIGAAPSLTFKPVVHARAMLSLDNTFSDEDARDFVAGIYRFLGKLPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPDV
VEVRGEIYMAKSDFAALNAEMAAQARPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW
GEMSAMPADTQFGMVETFKAWGFPVNPLMQRISSADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLRGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGVGNSGEPIRERRDIRIGDMVIVQRAGDVIPQIVDVVMDERPE
AAEPYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRHAFDI
EGLGSKQIEFFFESEDSALSIRTAPDIFTLERRQEASLAKLENIEGFGKVSVRKLYEAIN
ARRSIALHRFIYALGIRHVGETTAKLLARSYGSYEHFGAAMVEAGSLVGDAWNELNSIEG
IGEVVARAIVEFYKEPRNLKVVSDLLEEVTPESAETRVTTDSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGIQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgagaagaagcccgtcgagcaactgaccgaagtcgaagcagcggaggaactc
accttccttgcggcggaacttgcgcgccacgatgcgctgtatcacgggcaggatgcgccg
gaaatttcggacgcggactacgatgcgctgaagcgccgcaatgacgcgatcgaggcacac
tttccggcgctgattcgcgatgacagcccttcgaggaagatcggtgcggccccgtcgctg
accttcaagcccgtcgtccacgcccgggcgatgctgtcgctcgacaacaccttttccgat
gaggacgcccgcgatttcgtcgccggcatttaccgcttcctgggcaagctgccggaccat
tccattgcctttacggccgagccgaagatcgatgggctttccatgtcgctgcgctacgag
aaccggcggctggtgacggcggcaacgcgcggcgacggtacgacgggcgagaacgtcacc
gccaatatccgcacgatccggatgatcccgcagacattgccggccgatgcgcccgatgtc
gtcgaggtccgcggcgagatctatatggcgaaatccgattttgctgcgctcaatgcggag
atggcggcgcaggccaggccgctctatgtcaatccgcgcaacactgcgtccgggtcgctg
cggcagctcgatgccaaggtgacggcgagccgcaagctgcgctttttcgcctatgcctgg
ggggagatgtcggccatgccggccgatacgcagttcggcatggtcgagacgttcaaagcc
tggggcttcccggtcaatccgctgatgcagcgaatatcctcggccgacgaactgctcgag
cactatcaccacatcgagcgcgagcggccggatctcgactacgatattgacggcgtcgtc
tacaaggtcgaccggctcgatctgcaggcgcgcctcggtttccgctcacggagcccacgc
tgggcgacggcgcacaagttcccggccgaacaggccttcacgcggctcaggggcatcgac
atccaggtcggccgcaccggtgcgttgactccggttgcgcggctggagccgatcacagtg
gggggagtcgtcgtcaccaatgcgacgcttcacaatgaggactatatccgtggcgtcggc
aacagcggcgagccgatccgtgagcggcgcgatatccgcatcggcgacatggtcatcgtc
cagcgggcaggggacgtcatcccgcagatcgtcgacgtggtgatggacgagcggccggag
gcggcggagccctacaggttcccgaccacatgcccggtctgcggcagccatgcggtgcgc
gacatcaacgagaagaccggaaaggtggacgcggtgcgccgctgcaccggcggcttcgtc
tgccgggcccaggccgtcgagcacctgaagcatttcgtctcgcgccacgccttcgacatc
gaggggcttggatcgaagcagatcgaattcttcttcgaaagcgaggattcggcgctgtcg
atccgcaccgcgcccgacatcttcacgctggagcgccggcaggaggcgtcgctggccaag
ctcgaaaacatcgagggtttcggcaaggtcagcgtcaggaaactctatgaggcgatcaat
gcccgccgctcgatcgcgctccaccgcttcatctacgcgctcggcattcgccatgtcggc
gagacgacggccaaactgctcgcgcgttcctatggcagctatgaacatttcggcgcggcg
atggtcgaggcggggagcctcgtcggcgacgcctggaacgagctcaatagcatcgagggg
atcggcgaggtcgtcgcccgcgccatcgtcgaattctacaaggagccgcgcaatctcaag
gtcgtctccgacctgctcgaagaggtgacgccggaaagtgccgaaacgcgagtcacaacg
gacagccccgtcgccggcaagacggtggtcttcaccggctcgctcgaaaagatgacgcgc
gacgaggccaaggcgaaggcggaaagcctcggcgccaaggtggcgggctcggtctcgaag
aagaccgatatcgtggtggccggccccggcgccggctcgaagctcgataaggcccgcgaa
ctcggcatccagaccatggacgaggacgagtggctggcgctgattggtggttaa
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