Shigella flexneri 2002017 (serotype Fxv): SFxv_4015
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Entry
SFxv_4015 CDS
T01883
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfe
Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe03030
DNA replication
sfe03410
Base excision repair
sfe03420
Nucleotide excision repair
sfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFxv_4015 (ligB)
03410 Base excision repair
SFxv_4015 (ligB)
03420 Nucleotide excision repair
SFxv_4015 (ligB)
03430 Mismatch repair
SFxv_4015 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfe03032
]
SFxv_4015 (ligB)
03400 DNA repair and recombination proteins [BR:
sfe03400
]
SFxv_4015 (ligB)
Enzymes [BR:
sfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFxv_4015 (ligB)
DNA replication proteins [BR:
sfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFxv_4015 (ligB)
DNA repair and recombination proteins [BR:
sfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFxv_4015 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFxv_4015 (ligB)
MMR (mismatch excision repair)
DNA ligase
SFxv_4015 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFxv_4015 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADA75994
LinkDB
All DBs
Position
complement(3822004..3823692)
Genome browser
AA seq
562 aa
AA seq
DB search
MKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVED
GVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSD
LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANSTLQ
GEIFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKE
LATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAE
WLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWD
IAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLV
WLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFN
LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWK
ENAQIKKLGSWLAAQQITGFEP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtg
tgggcggtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaa
cagcaaataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagac
ggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgtgagcgag
ccccgcgacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacg
ggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaacgtagcgat
ctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaa
ctgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagtt
agcttaatttccgctgtgctgcaaaccgttagcgggcctttagccaacagtacgcttcag
ggggaaatatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcc
cgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgacacgctaaactcactg
gctgtttttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggag
ctggctaccgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgat
gaggttgcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggc
gtggttgtgcgaggggctaaggaacccgaatcccgtcattggctaccgggccaggcggag
tggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcag
tttgcggtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctg
gatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggat
attgcgcctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgat
gatgtggtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaac
ccgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtc
tggctggggtcaaaacaggttctggggctggatggcattggtgaggccggttggcgcgcg
ctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaa
ttacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaat
ctggctcgtaaccagccttttactcgctgggtgatggcaatgggaataccgctaacccgg
gcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcag
ttctggcagcagctgccggggactggatctgggcgcgccagacaggttattgaatggaag
gaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggtttt
gaaccttag
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