Streptomyces ferrugineus: IM697_35820
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Entry
IM697_35820 CDS
T07428
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfeu
Streptomyces ferrugineus
Pathway
sfeu03030
DNA replication
sfeu03410
Base excision repair
sfeu03420
Nucleotide excision repair
sfeu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM697_35820 (ligA)
03410 Base excision repair
IM697_35820 (ligA)
03420 Nucleotide excision repair
IM697_35820 (ligA)
03430 Mismatch repair
IM697_35820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfeu03032
]
IM697_35820 (ligA)
03400 DNA repair and recombination proteins [BR:
sfeu03400
]
IM697_35820 (ligA)
Enzymes [BR:
sfeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IM697_35820 (ligA)
DNA replication proteins [BR:
sfeu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IM697_35820 (ligA)
DNA repair and recombination proteins [BR:
sfeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IM697_35820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IM697_35820 (ligA)
MMR (mismatch excision repair)
DNA ligase
IM697_35820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IM697_35820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Zn_ribbon_TFIIB
HHH
Motif
Other DBs
NCBI-ProteinID:
QOV35385
UniProt:
A0A7M2SI29
LinkDB
All DBs
Position
complement(8046604..8048796)
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPAEAREKHAQLAEQIEEHRFRYYVKDAPVISDAEFDRLLRSLEAVEDEY
PELRTPDSPTQKVAVEYETDLAEVEHRERMLSLDNVFDDAGLAAWAERVAKDVGSSDYHL
LCELKVDGLAVNLTYEDGRLTRAATRGTGRIGEDITPNVMTIAEIPHRLKGDRVPRLVEI
RGEVYFPMEAFADLNARRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAL
EGFDGMTRLSEAYDLLKTWGLPTSTHNKVVDDLDGVREFIAYYGENRHSVEHEIDGVVVK
LDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECPE
CGTALRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAAAALTKPLEPA
DPPLADEGDLFDLSPEQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQQGELKKNAV
AMLEFIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQASEEELANTEGVGS
IIAASLKEWFAEEWHQEILRKWKAAGVRMEEEGSGADEGPRPLEGLTVVVTGTLEHFTRD
GAKDALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLNEDGFNVLLEQGPDA
AAEVALPAEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccgccgaggcacgggagaagcacgcg
cagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccggtc
atcagcgacgcggagttcgacaggctgctgcgctcgctggaggcggtcgaggacgagtac
cccgagctgcgcacgcccgactcaccgacccagaaggtcgcggtcgagtacgagaccgac
cttgccgaggtggagcaccgcgagcgcatgctctccctcgacaacgtcttcgacgacgcg
gggctcgccgcctgggcagagagagtggccaaggacgtcggcagttccgactatcacctc
ctgtgcgagctcaaggtcgacgggctcgcggtgaacctgacgtacgaggacggccgactc
acccgcgcggccacccggggtaccggacggatcggcgaggacatcacgcccaatgtcatg
acgatcgcggagatcccacatcggctgaagggcgaccgtgtcccgcgactcgtcgagatc
cgtggcgaggtctacttcccgatggaggccttcgcggacctcaacgcccggcgggtggcg
gccggggagaagccgtacgccaacccgcgcaactccgcctcgggttcgctgcggcagaag
gacccgaaggtcacggcgacccttcccctgcacatggtcgtccacggcatcggcgccctg
gagggcttcgacggcatgacccgcctctcggaggcgtacgacctgctcaagacgtggggt
ctgcccacctcgacccacaacaaggtggtcgacgacctcgacggcgtacgggagttcatc
gcctactacggcgagaaccggcactccgtggagcacgagatcgacggagtcgtcgtcaag
ctcgacgagatccgcctccagggccgcctcgggtccaccgcgcgcgccccgcgctgggcc
atcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgtgtgggc
gtcggccgcaccggccgggtcacgccgtacgcccaggtcgagccggtcacggtcgcgggc
tcggaggtcgagttcgccaccctgcacaaccaggacgtcgtcaaggccaagggcgtcctc
atcggcgacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggtccg
gtcgtcgacctgcgcgacggcagcgagcgcgagttcgtgatgccggccgagtgcccggag
tgcggtacggcgctcaggcccatgaaggaaggcgacgtcgacctgcgctgcccgaacgcc
cgtacctgcccggcccagttgcgcgagcggctgttctacctcgcgggccgcaaggcgctg
gacatcgagcacttcggctacgtcgccgccgccgcgctcaccaagccgctggagccggcc
gatccgccactggccgacgagggcgacctgttcgacctgtcgcccgagcagctcctgccc
atcaaggcctacgtcctcgaccaggacagcggcctgcccaagcgcgacccgaagaccggc
gaggagaagatcgccacggtcttcgccaaccagcagggcgagctcaagaagaacgcggtc
gcgatgctggagttcatcgccgccgccaaggagcgcccgctggcccgcgtcctgaccgga
ctgtcgatccgtcacgtcggcccggtcgccgcggaggcgctggcccgggagttccgctcc
atcgaccgtatcgagcaggcgagcgaggaggagctggcgaacaccgagggcgtcggctcg
atcatcgccgcctcgctcaaggagtggttcgccgaggagtggcaccaggagatcctccgc
aagtggaaggcggccggcgtccgcatggaggaggagggctccggggcggatgaggggccg
cgtccgctggaggggctcacggtggtggtgaccggcacactggagcacttcacgcgcgac
ggcgccaaggacgcgctccagagccgcggggcgaaagtgaccggttccgtttcgaagaag
acatcttttgttgtcgtaggtgacagccccgggtccaaatatgacaaggccatgcagctg
aaggtgcctgttctgaacgaggatggcttcaatgtcctgttggaacagggccccgacgcg
gcggccgaagttgccctccccgcggaggagtag
DBGET
integrated database retrieval system