KEGG   PATHWAY: sfh00920
Entry
sfh00920                    Pathway                                
Name
Sulfur metabolism - Sinorhizobium fredii HH103
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
sfh00920  Sulfur metabolism
sfh00920

Module
sfh_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sfh00920]
Other DBs
GO: 0006790
Organism
Sinorhizobium fredii HH103 [GN:sfh]
Gene
SFHH103_00177  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
SFHH103_00190  [KO:K20035] [EC:1.3.99.41]
SFHH103_00554  [KO:K20035] [EC:1.3.99.41]
SFHH103_00633  cysN; sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
SFHH103_00634  cysd1; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
SFHH103_00635  cysH; phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
SFHH103_01193  cysI; sulfite reductase (NADPH) hemoprotein beta-component [KO:K00381] [EC:1.8.1.2]
SFHH103_01206  cyse1; cyse1 [KO:K00640] [EC:2.3.1.30]
SFHH103_01388  sseA; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
SFHH103_01390  cysK2; cysteine synthase protein [KO:K01738] [EC:2.5.1.47]
SFHH103_02382  [KO:K01082] [EC:3.1.3.7]
SFHH103_02422  [KO:K15555] [EC:7.6.2.14]
SFHH103_02423  ssuC; aliphatic sulfonates transport permease protein [KO:K15554]
SFHH103_02424  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
SFHH103_02425  ssuA; putative aliphatic sulfonates-binding protein [KO:K15553]
SFHH103_02537  cysA; sulfate ABC transporter, ATP-binding protein,putative [KO:K02045] [EC:7.3.2.3]
SFHH103_02538  sbp; Sulfate-binding protein [KO:K02048]
SFHH103_02548  [KO:K17228] [EC:1.14.14.35]
SFHH103_02549  [KO:K00299] [EC:1.5.1.38]
SFHH103_02933  cyse3; putative serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
SFHH103_03191  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
SFHH103_03935  cysK1; cysK1 [KO:K01738] [EC:2.5.1.47]
SFHH103_05131  [KO:K17285] [EC:1.8.3.4]
SFHH103_05246  soxY; sulfur oxidation SoxY protein [KO:K17226]
SFHH103_05247  soxZ; Sulphur oxidation protein SoxZ [KO:K17227]
SFHH103_05249  soxF; sulfur oxidation SoxF protein [KO:K17229] [EC:1.8.2.3]
SFHH103_05453  tauC; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15552]
SFHH103_05454  tauB; putative taurine ABC transporter, ATP-binding protein [KO:K10831] [EC:7.6.2.7]
SFHH103_05455  tauA; Taurine-binding periplasmic protein [KO:K15551]
SFHH103_05962  [KO:K01082] [EC:3.1.3.7]
SFHH103_05963  nodQ; Putative ATP-sulfurylase large subunit/adenylylsulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
SFHH103_05964  nodP; Putative ATP-sulfurylase small subunit [KO:K00957] [EC:2.7.7.4]
SFHH103_05983  [KO:K23163]
SFHH103_05984  cysT; Putative sulfate ABC transporter, permease protein [KO:K02046]
SFHH103_05985  cysW; Putative sulfate ABC transporter, permease protein [KO:K02047]
SFHH103_05986  cysA; Putative sulfate ABC transporter, ATP-binding protein [KO:K02045] [EC:7.3.2.3]
SFHH103_06624  [KO:K15554]
SFHH103_06625  [KO:K15555] [EC:7.6.2.14]
SFHH103_06626  [KO:K15553]
SFHH103_06758  [KO:K00299] [EC:1.5.1.38]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00163  Propanoate
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
sfh00260  Glycine, serine and threonine metabolism
sfh00270  Cysteine and methionine metabolism
sfh00640  Propanoate metabolism
sfh00680  Methane metabolism
sfh00720  Other carbon fixation pathways
KO pathway
ko00920   

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