Sinorhizobium fredii HH103: SFHH103_01996
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Entry
SFHH103_01996 CDS
T01731
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03030
DNA replication
sfh03410
Base excision repair
sfh03420
Nucleotide excision repair
sfh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFHH103_01996 (ligA)
03410 Base excision repair
SFHH103_01996 (ligA)
03420 Nucleotide excision repair
SFHH103_01996 (ligA)
03430 Mismatch repair
SFHH103_01996 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfh03032
]
SFHH103_01996 (ligA)
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_01996 (ligA)
Enzymes [BR:
sfh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFHH103_01996 (ligA)
DNA replication proteins [BR:
sfh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFHH103_01996 (ligA)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFHH103_01996 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFHH103_01996 (ligA)
MMR (mismatch excision repair)
DNA ligase
SFHH103_01996 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFHH103_01996 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
5_3_exonuc
HHH
Nlig-Ia
RNA_ligase
FdhE_central
HHH_3
DUF4796_N
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
CCE96491
UniProt:
G9A8B1
LinkDB
All DBs
Position
complement(2132517..2134673)
Genome browser
AA seq
718 aa
AA seq
DB search
MLNEKKPVEQLTETEAAEELAYLATELARHDALYHGQDAPEISDADYDALKRRNDLIEEF
FPALIREDSPSRKVGAAPSLTFQPVVHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPDN
SIAFTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPDV
VEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW
GEISAMPADTQFGMVETFKAWGFPVNPLMQRLSSADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAE
GAEPYRFPATCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRHAFDI
EGLGSKQIEFFFEAEDSAMQIRTAPDIFTLKRRQQKSELTKLENIDGFGKVSVEKLFEAI
EKRRTIALHRFIYALGIRHVGETTAKLLARSYGSYDHFGEAMVEAGSLAGDAWNELNSIE
GIGEVVARAIVEFYKEPRNLKVVSALLEEVRPASAEMPVATDSPVAGKTVVFTGSLEKMT
RDEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacgagaagaaacccgtcgagcaactgaccgaaacggaagcggccgaggagctc
gcctacctcgcgacggagcttgcacgccatgatgcgctctatcacgggcaggatgcgccg
gagatctcggatgcggactatgacgccctgaagcgccgcaatgatctgatcgaggagttc
tttccggcgctgatccgcgaggatagcccttcgaggaaggtcggtgctgcaccgtcgctg
accttccaaccggttgtccatgcccggccgatgctctcgctcgacaacaccttttccgac
gaggatgcccgcgatttcgtcgccggcatctatcgttttcttggcaagctgccggacaat
tccatcgcctttaccgttgagccgaagatcgacgggctttccatgtcgctgcgctacgaa
aaccggcggctggtgacggcggcgacgcgtggcgacgggacgaccggcgagaacgtcacc
gccaatatccgcacgatccgcatgatcccgcagaccttgccggccgatgcgcccgatgtc
gtcgaagtccgcggtgaaatctatatggcaaagtccgactttgccgctctcaatgccgaa
atggcggcgcagggcaggccgctctacgtcaatccgcgcaataccgcgtccggatcgctc
cggcagctcgatgcgaaagtgacggcgagccgcaagctgcgctttttcgcctatgcatgg
ggcgagatctccgcaatgccggcagatacgcagttcggcatggtcgaaaccttcaaggcc
tggggattcccggtcaatccgctgatgcagcgtttgtcttccgcagacgaactgcttgag
cattatcaccatatcgagcgcgagcgcccggatctcgactacgatatcgacggcgtcgtc
tacaaggtcgaccgcctcgacctgcaggcgcggttgggcttccgctcgcgcagcccacgc
tgggcgacggcgcacaagttcccggccgagcaggccttcacgcggctgaagggcatcgac
atccaggtcggccgcaccggggcgctgacgccggtcgcgcggctggagccgatcaccgtg
ggcggtgtcgtcgtcaccaacgcgacgttgcacaatgaggactatatccgcggcatcggc
aacagcggcgagccgatccgcgaagggcgcgacatccgcatcggcgacatggtcatcgtc
cagcgggcgggggacgtcatcccgcagatcgtcgacgtcgtgatggacgagcgggcggag
ggggcggagccttaccggttcccggccacatgcccggtctgtggcagccatgcggtgcgc
gatatcaacgagaagaccggcaaggtggatgcggtacgccgctgcaccggcggctttgtc
tgccgggctcaggccgtcgagcacctgaagcacttcgtgtcccggcacgccttcgacata
gagggacttggatcaaagcagatcgagttctttttcgaggcggaagattctgcgatgcag
atacgcaccgctcctgacattttcacacttaagcggcggcaacagaagtccgagctaacg
aagcttgaaaacatcgatggctttggaaaggtcagcgtcgagaagctcttcgaagcgatc
gaaaagcgccgtacgatcgcgctccatcgcttcatctatgcgctcggtatccgccatgtc
ggcgagacgacggccaagctgctggcgcgctcctatggcagttacgatcatttcggcgaa
gcgatggtcgaggcggggagcctcgccggggatgcctggaacgagctcaacagtatcgag
ggtatcggcgaggtcgtcgcccgcgccatcgtcgagttctacaaggagccgcgcaatctc
aaggtcgtgtcagccctgcttgaagaggtgaggcctgcaagcgccgaaatgccggtcgcg
acggacagccccgtcgccggcaagacggtggtcttcaccgggtcgcttgaaaaaatgacg
cgcgacgaggcgaaggcaaaggcggaaagcctcggtgccaaggtggcaggctcggtctcg
aagaagaccgacatcgtggtcgccggtcctggtgccggctcgaagctcgacaaggcccgc
gaacttggcgtccagaccatggacgaggacgagtggctggcgctgattggtgggtag
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